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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:psz03030]
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03410 Base excision repair [PATH:psz03410]
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03420 Nucleotide excision repair [PATH:psz03420]
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03430 Mismatch repair [PATH:psz03430]
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03440 Homologous recombination [PATH:psz03440]
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 PSTAB_2744 recJ; single-stranded-DNA-specific exonuclease RecJ
PSTAB_1183 single-stranded DNA-binding protein
PSTAB_0700 putative single stranded DNA binding protein
PSTAB_0003 recF; recombination protein F
PSTAB_1141 recO; DNA repair protein RecO
PSTAB_1720 recR; recombination protein RecR
PSTAB_1412 recA; recombinase A
PSTAB_0168 polA; DNA polymerase I
PSTAB_2831 ruvA; Holliday junction DNA helicase RuvA
PSTAB_2830 ruvB; Holliday junction DNA helicase RuvB
PSTAB_2832 ruvC; Holliday junction resolvase
PSTAB_0195 recG; ATP-dependent DNA helicase RecG
PSTAB_3426 recB; exodeoxyribonuclease V beta chain
PSTAB_3994 recB; exodeoxyribonuclease V, beta subunit
PSTAB_3427 recC; exodeoxyribonuclease V gamma chain
PSTAB_3995 recC; exodeoxyribonuclease V gamma chain
PSTAB_3425 recD; exodeoxyribonuclease V alpha chain
PSTAB_3993 recD; exodeoxyribonuclease V alpha chain
PSTAB_1456 dnaE; DNA polymerase III subunit alpha
PSTAB_0002 dnaN; DNA polymerase III subunit beta
PSTAB_1718 dnaX; DNA polymerase III subunits gamma and tau
PSTAB_3724 holA; DNA polymerase III subunit delta
PSTAB_2597 holB; DNA polymerase III subunit delta'
PSTAB_2136 dnaQ; DNA polymerase III subunit epsilon
PSTAB_3859 exonuclease
PSTAB_3105 holC; DNA polymerase III, chi subunit
PSTAB_0585 priA; primosome assembly protein PriA
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:psz03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:psz03000]
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03021 Transcription machinery [BR:psz03021]
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03019 Messenger RNA biogenesis [BR:psz03019]
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03041 Spliceosome
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03011 Ribosome [BR:psz03011]
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03009 Ribosome biogenesis [BR:psz03009]
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03016 Transfer RNA biogenesis [BR:psz03016]
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03012 Translation factors [BR:psz03012]
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03110 Chaperones and folding catalysts [BR:psz03110]
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04131 Membrane trafficking [BR:psz04131]
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04121 Ubiquitin system [BR:psz04121]
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03051 Proteasome [BR:psz03051]
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03032 DNA replication proteins [BR:psz03032]
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03036 Chromosome and associated proteins [BR:psz03036]
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03400 DNA repair and recombination proteins [BR:psz03400]
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PSTAB_1860 phrB; deoxyribodipyrimidine photolyase
PSTAB_1124 uracil-DNA glycosylase
PSTAB_4065 mutY; A / G specific adenine glycosylase
PSTAB_1113 endonuclease III
PSTAB_1997 rad3-related DNA helicase
PSTAB_3211 hypothetical protein
PSTAB_0507 deoxyuridine 5'-triphosphate nucleotidohydrolase
PSTAB_3591 AraC family transcriptional regulator
PSTAB_0854 hypothetical protein
PSTAB_0269 uracil-DNA glycosylase
PSTAB_3923 leucyl-tRNA synthetase
PSTAB_2324 alkA; DNA-3-methyladenine glycosidase II
PSTAB_0017 DNA-3-methyladenine glycosidase I
PSTAB_3967 mutM; formamidopyrimidine-DNA glycosylase
PSTAB_0750 endonuclease
PSTAB_0501 catabolite repression control protein
PSTAB_2072 xthA; exonuclease III
PSTAB_3154 exodeoxyribonuclease III
PSTAB_3597 endonuclease V
PSTAB_2744 recJ; single-stranded-DNA-specific exonuclease RecJ
PSTAB_3892 yicF; DNA ligase B
PSTAB_1757 ligA; DNA ligase
PSTAB_0168 polA; DNA polymerase I
PSTAB_0698 uvrA; excinuclease ABC subunit A
PSTAB_3036 uvrB; excinuclease ABC subunit B
PSTAB_1980 uvrC; excinuclease ABC subunit C
PSTAB_0238 uvrD; DNA-dependent helicase II
PSTAB_0663 rpoB; DNA-directed RNA polymerase subunit beta
PSTAB_0664 rpoC; DNA-directed RNA polymerase subunit beta'
PSTAB_0695 rpoA; DNA-directed RNA polymerase subunit alpha
PSTAB_0491 rpoZ; DNA-directed RNA polymerase subunit omega
PSTAB_2638 transcription-repair coupling protein Mfd
PSTAB_1409 mutS; DNA mismatch repair protein mutS
PSTAB_3634 mutL; DNA mismatch repair protein
PSTAB_1064 sbcB; exonuclease I
PSTAB_3055 xseA; exodeoxyribonuclease VII large subunit
PSTAB_3663 xseB; exodeoxyribonuclease VII, small subunit
PSTAB_1456 dnaE; DNA polymerase III subunit alpha
PSTAB_0002 dnaN; DNA polymerase III subunit beta
PSTAB_3105 holC; DNA polymerase III, chi subunit
PSTAB_3724 holA; DNA polymerase III subunit delta
PSTAB_2597 holB; DNA polymerase III subunit delta'
PSTAB_2136 dnaQ; DNA polymerase III subunit epsilon
PSTAB_3859 exonuclease
PSTAB_1718 dnaX; DNA polymerase III subunits gamma and tau
PSTAB_1183 single-stranded DNA-binding protein
PSTAB_0700 putative single stranded DNA binding protein
PSTAB_3426 recB; exodeoxyribonuclease V beta chain
PSTAB_3994 recB; exodeoxyribonuclease V, beta subunit
PSTAB_3427 recC; exodeoxyribonuclease V gamma chain
PSTAB_3995 recC; exodeoxyribonuclease V gamma chain
PSTAB_3425 recD; exodeoxyribonuclease V alpha chain
PSTAB_3993 recD; exodeoxyribonuclease V alpha chain
PSTAB_1412 recA; recombinase A
PSTAB_2831 ruvA; Holliday junction DNA helicase RuvA
PSTAB_2830 ruvB; Holliday junction DNA helicase RuvB
PSTAB_2832 ruvC; Holliday junction resolvase
PSTAB_0585 priA; primosome assembly protein PriA
PSTAB_0738 sbcC; exonuclease SbcC
PSTAB_0739 sbcD; exonuclease SbcD
PSTAB_0838 radA; DNA repair protein RadA
PSTAB_0003 recF; recombination protein F
PSTAB_0195 recG; ATP-dependent DNA helicase RecG
PSTAB_1141 recO; DNA repair protein RecO
PSTAB_1720 recR; recombination protein RecR
PSTAB_3374 recN; DNA repair protein RecN
PSTAB_2756 rdgC; recombination associated protein
PSTAB_1068 hypothetical protein
PSTAB_2050 KU domain-containing protein
PSTAB_2049 hypothetical protein
PSTAB_2018 ligD; ATP-dependent DNA ligase
PSTAB_2223 gyrA; DNA gyrase subunit A
PSTAB_0004 gyrB; DNA gyrase subunit B
PSTAB_2101 DNA topoisomerase, type I, putative
PSTAB_1623 topA; DNA topoisomerase I
PSTAB_0470 hupA; HU family DNA-binding protein
PSTAB_1962 hupB; histone-like DNA-binding protein
PSTAB_3325 DNA-binding protein Fis
PSTAB_2264 himA; integration host factor subunit alpha
PSTAB_2416 ihfB; integration host factor subunit beta
PSTAB_0327 ATP-dependent DNA helicase domain-containing protein
PSTAB_2367 recQ; ATP-dependent DNA helicase RecQ
PSTAB_3032 dinP; DNA polymerase IV
PSTAB_2791 impB/mucB/samB family protein
PSTAB_2792 rulA; ultraviolet light resistance protein A
PSTAB_1628 lexA; LexA repressor
PSTAB_2770 polB; DNA polymerase II
PSTAB_2225 cell division inhibitor SulA, putative
PSTAB_2226 nucleotidyltransferase/DNA polymerase involved in DNA repair
PSTAB_2227 dnaE; error-prone DNA polymerase
PSTAB_1413 recX; recombination regulator RecX
PSTAB_0534 ATP-dependent DNA helicase Rep
PSTAB_1848 helicase
PSTAB_1427 dinG; ATP-dependent DNA helicase DinG
PSTAB_2645 DEAD-box ATP dependent DNA helicase
PSTAB_0162 ribonucleotide reductase, alpha subunit
PSTAB_1548 nrdA; ribonucleotide-diphosphate reductase subunit alpha
PSTAB_1547 nrdB; ribonucleotide-diphosphate reductase subunit beta
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K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:psz03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Stutzerimonas stutzeri ATCC 17588 = LMG 11199