DNA Repair and Recombination Proteins - Paramecium tetraurelia

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     KO
 Eukaryotic type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         GSPATT00030579001 hypothetical protein
K04802 PCNA; proliferating cell nuclear antigen 
         GSPATT00010174001 hypothetical protein
K04802 PCNA; proliferating cell nuclear antigen 
         GSPATT00004216001 hypothetical protein
K04802 PCNA; proliferating cell nuclear antigen 
         GSPATT00024697001 hypothetical protein
K04802 PCNA; proliferating cell nuclear antigen 
         GSPATT00011429001 hypothetical protein
K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] 
         GSPATT00011232001 hypothetical protein
K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] 
         GSPATT00024948001 hypothetical protein
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         GSPATT00020651001 hypothetical protein
         GSPATT00024066001 hypothetical protein
         GSPATT00024948001 hypothetical protein
         GSPATT00012230001 hypothetical protein
         GSPATT00010232001 hypothetical protein
         GSPATT00006447001 hypothetical protein
         GSPATT00009749001 hypothetical protein
         GSPATT00030001001 hypothetical protein
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K03872 ELOC; elongin-C 
K03872 ELOC; elongin-C 
K03873 ELOB; elongin-B 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         GSPATT00030579001 hypothetical protein
         GSPATT00010174001 hypothetical protein
         GSPATT00004216001 hypothetical protein
         GSPATT00024697001 hypothetical protein
         GSPATT00034957001 hypothetical protein
         GSPATT00018745001 hypothetical protein
         GSPATT00018289001 hypothetical protein
         GSPATT00024948001 hypothetical protein
K04802 PCNA; proliferating cell nuclear antigen 
K04802 PCNA; proliferating cell nuclear antigen 
K04802 PCNA; proliferating cell nuclear antigen 
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic type

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Last updated: March 29, 2024