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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:raq03030]
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 Rahaq2_2909 DNA polymerase III, theta subunit
Rahaq2_1247 DNA polymerase III, theta subunit
Rahaq2_0989 DNA polymerase III, epsilon subunit
Rahaq2_0941 DNA-directed DNA polymerase III PolC
Rahaq2_3389 DNA polymerase III, subunit gamma/tau
Rahaq2_2971 DNA polymerase III, delta'' subunit
Rahaq2_3240 DNA polymerase III, delta subunit
Rahaq2_3933 DNA polymerase III, psi subunit
Rahaq2_3987 DNA polymerase III, chi subunit
Rahaq2_0003 DNA polymerase III, beta subunit
Rahaq2_4190 replicative DNA helicase
Rahaq2_0634 DNA primase, catalytic core
Rahaq2_4166 single stranded DNA-binding protein
Rahaq2_0986 ribonuclease HI
Rahaq2_0940 ribonuclease HII
Rahaq2_4510 DNA polymerase I
Rahaq2_1181 DNA ligase, NAD-dependent
Rahaq2_4488 NAD-dependent DNA ligase
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K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03410 Base excision repair [PATH:raq03410]
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03420 Nucleotide excision repair [PATH:raq03420]
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03430 Mismatch repair [PATH:raq03430]
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Rahaq2_0704 DNA mismatch repair protein MutS
Rahaq2_0453 DNA mismatch repair protein MutL
Rahaq2_0888 DNA mismatch repair endonuclease MutH
Rahaq2_4348 DNA helicase II
Rahaq2_1645 exonuclease I
Rahaq2_1124 exodeoxyribonuclease VII, large subunit
Rahaq2_3448 exodeoxyribonuclease VII, small subunit
Rahaq2_4757 DNA polymerase III epsilon subunit-like 3'-5' exonuclease
Rahaq2_0820 single-stranded-DNA-specific exonuclease RecJ
Rahaq2_4166 single stranded DNA-binding protein
Rahaq2_0941 DNA-directed DNA polymerase III PolC
Rahaq2_0003 DNA polymerase III, beta subunit
Rahaq2_3389 DNA polymerase III, subunit gamma/tau
Rahaq2_3240 DNA polymerase III, delta subunit
Rahaq2_2971 DNA polymerase III, delta'' subunit
Rahaq2_0989 DNA polymerase III, epsilon subunit
Rahaq2_2909 DNA polymerase III, theta subunit
Rahaq2_1247 DNA polymerase III, theta subunit
Rahaq2_3987 DNA polymerase III, chi subunit
Rahaq2_3933 DNA polymerase III, psi subunit
Rahaq2_1181 DNA ligase, NAD-dependent
Rahaq2_4488 NAD-dependent DNA ligase
Rahaq2_0290 DNA adenine methylase Dam
Rahaq2_3333 DNA adenine methylase Dam
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K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
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03440 Homologous recombination [PATH:raq03440]
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Rahaq2_0820 single-stranded-DNA-specific exonuclease RecJ
Rahaq2_4166 single stranded DNA-binding protein
Rahaq2_0004 recF protein
Rahaq2_3510 DNA repair protein RecO
Rahaq2_3387 recombination protein RecR
Rahaq2_0716 protein RecA
Rahaq2_4510 DNA polymerase I
Rahaq2_1797 Holliday junction DNA helicase, RuvA subunit
Rahaq2_1798 Holliday junction DNA helicase, RuvB subunit
Rahaq2_1796 crossover junction endodeoxyribonuclease RuvC
Rahaq2_4493 ATP-dependent DNA helicase RecG
Rahaq2_0069 putative transcriptional regulator with HTH domain
Rahaq2_1062 exodeoxyribonuclease V, beta subunit
Rahaq2_1061 exodeoxyribonuclease V, gamma subunit
Rahaq2_1063 exodeoxyribonuclease V, alpha subunit
Rahaq2_0941 DNA-directed DNA polymerase III PolC
Rahaq2_0003 DNA polymerase III, beta subunit
Rahaq2_3389 DNA polymerase III, subunit gamma/tau
Rahaq2_3240 DNA polymerase III, delta subunit
Rahaq2_2971 DNA polymerase III, delta'' subunit
Rahaq2_0989 DNA polymerase III, epsilon subunit
Rahaq2_2909 DNA polymerase III, theta subunit
Rahaq2_1247 DNA polymerase III, theta subunit
Rahaq2_3987 DNA polymerase III, chi subunit
Rahaq2_3933 DNA polymerase III, psi subunit
Rahaq2_4427 primosomal protein N''
Rahaq2_0469 primosomal replication protein N
Rahaq2_3393 primosomal replication protein N''
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:raq03000]
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03021 Transcription machinery [BR:raq03021]
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03019 Messenger RNA biogenesis [BR:raq03019]
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03041 Spliceosome
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03011 Ribosome [BR:raq03011]
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03009 Ribosome biogenesis [BR:raq03009]
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03016 Transfer RNA biogenesis [BR:raq03016]
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03012 Translation factors [BR:raq03012]
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03110 Chaperones and folding catalysts [BR:raq03110]
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04131 Membrane trafficking [BR:raq04131]
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04121 Ubiquitin system [BR:raq04121]
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03051 Proteasome [BR:raq03051]
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03032 DNA replication proteins [BR:raq03032]
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Rahaq2_0986 ribonuclease HI
Rahaq2_3962 DNA-methyltransferase Dcm
Rahaq2_3332 site-specific DNA methylase
Rahaq2_4228 bacterial nucleoid DNA-binding protein
Rahaq2_3427 bacterial nucleoid DNA-binding protein
Rahaq2_2859 integration host factor, alpha subunit
Rahaq2_1566 integration host factor, beta subunit
Rahaq2_0002 chromosomal replication initiator protein DnaA
Rahaq2_4190 replicative DNA helicase
Rahaq2_0634 DNA primase, catalytic core
Rahaq2_4166 single stranded DNA-binding protein
Rahaq2_0941 DNA-directed DNA polymerase III PolC
Rahaq2_0003 DNA polymerase III, beta subunit
Rahaq2_3987 DNA polymerase III, chi subunit
Rahaq2_3240 DNA polymerase III, delta subunit
Rahaq2_2971 DNA polymerase III, delta'' subunit
Rahaq2_0989 DNA polymerase III, epsilon subunit
Rahaq2_3389 DNA polymerase III, subunit gamma/tau
Rahaq2_3933 DNA polymerase III, psi subunit
Rahaq2_2909 DNA polymerase III, theta subunit
Rahaq2_1247 DNA polymerase III, theta subunit
Rahaq2_0940 ribonuclease HII
Rahaq2_4510 DNA polymerase I
Rahaq2_1181 DNA ligase, NAD-dependent
Rahaq2_4488 NAD-dependent DNA ligase
Rahaq2_2325 DNA replication terminus site-binding protein
Rahaq2_0290 DNA adenine methylase Dam
Rahaq2_3333 DNA adenine methylase Dam
Rahaq2_3204 negative regulator of replication initiationR
Rahaq2_3346 DnaA regulatory inactivator Hda
Rahaq2_1365 DNA gyrase, A subunit
Rahaq2_0005 DNA gyrase, B subunit
Rahaq2_0659 DNA topoisomerase IV, A subunit, proteobacterial
Rahaq2_0656 DNA topoisomerase IV, B subunit, proteobacterial
Rahaq2_2072 DNA topoisomerase I, bacterial
Rahaq2_2189 DNA topoisomerase III
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K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10748 tus; DNA replication terminus site-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03645 seqA; negative modulator of initiation of replication
K10763 hda; DnaA-homolog protein
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
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03036 Chromosome and associated proteins [BR:raq03036]
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03400 DNA repair and recombination proteins [BR:raq03400]
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Rahaq2_0602 O-6-methylguanine DNA methyltransferase
Rahaq2_3194 deoxyribodipyrimidine photolyase
Rahaq2_3524 uracil-DNA glycosylase
Rahaq2_3637 A/G-specific adenine glycosylase
Rahaq2_2457 endonuclease III
Rahaq2_3816 mutator mutT protein
Rahaq2_4478 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Rahaq2_0167 O-6-methylguanine DNA methyltransferase
Rahaq2_3546 O-6-methylguanine DNA methyltransferase
Rahaq2_3719 alkylated DNA repair protein
Rahaq2_0632 G:T/U mismatch-specific DNA glycosylase
Rahaq2_3359 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
Rahaq2_0023 DNA-3-methyladenine glycosylase I
Rahaq2_2327 3-methyladenine DNA glycosylase
Rahaq2_4473 formamidopyrimidine-DNA glycosylase Fpg
Rahaq2_3186 formamidopyrimidine-DNA glycosylase
Rahaq2_2192 exodeoxyribonuclease III
Rahaq2_1414 apurinic endonuclease APN1
Rahaq2_4230 deoxyinosine 3'endonuclease (endonuclease V)
Rahaq2_0820 single-stranded-DNA-specific exonuclease RecJ
Rahaq2_1181 DNA ligase, NAD-dependent
Rahaq2_4488 NAD-dependent DNA ligase
Rahaq2_4510 DNA polymerase I
Rahaq2_4167 excinuclease ABC, A subunit
Rahaq2_3118 excinuclease ABC, B subunit
Rahaq2_3032 excinuclease ABC, C subunit
Rahaq2_0190 putative endonuclease
Rahaq2_4348 DNA helicase II
Rahaq2_4242 DNA-directed RNA polymerase, beta subunit
Rahaq2_4241 DNA-directed RNA polymerase, beta'' subunit, predominant form
Rahaq2_0386 DNA-directed RNA polymerase, alpha subunit
Rahaq2_4490 DNA-directed RNA polymerase, omega subunit
Rahaq2_2958 transcription-repair coupling factor Mfd
Rahaq2_0704 DNA mismatch repair protein MutS
Rahaq2_0453 DNA mismatch repair protein MutL
Rahaq2_0888 DNA mismatch repair endonuclease MutH
Rahaq2_1645 exonuclease I
Rahaq2_1124 exodeoxyribonuclease VII, large subunit
Rahaq2_3448 exodeoxyribonuclease VII, small subunit
Rahaq2_4757 DNA polymerase III epsilon subunit-like 3'-5' exonuclease
Rahaq2_0941 DNA-directed DNA polymerase III PolC
Rahaq2_0003 DNA polymerase III, beta subunit
Rahaq2_3987 DNA polymerase III, chi subunit
Rahaq2_3240 DNA polymerase III, delta subunit
Rahaq2_2971 DNA polymerase III, delta'' subunit
Rahaq2_0989 DNA polymerase III, epsilon subunit
Rahaq2_3389 DNA polymerase III, subunit gamma/tau
Rahaq2_3933 DNA polymerase III, psi subunit
Rahaq2_2909 DNA polymerase III, theta subunit
Rahaq2_1247 DNA polymerase III, theta subunit
Rahaq2_4166 single stranded DNA-binding protein
Rahaq2_0290 DNA adenine methylase Dam
Rahaq2_3333 DNA adenine methylase Dam
Rahaq2_3963 DNA mismatch endonuclease Vsr
Rahaq2_1062 exodeoxyribonuclease V, beta subunit
Rahaq2_1061 exodeoxyribonuclease V, gamma subunit
Rahaq2_1063 exodeoxyribonuclease V, alpha subunit
Rahaq2_0716 protein RecA
Rahaq2_1797 Holliday junction DNA helicase, RuvA subunit
Rahaq2_1798 Holliday junction DNA helicase, RuvB subunit
Rahaq2_1796 crossover junction endodeoxyribonuclease RuvC
Rahaq2_4427 primosomal protein N''
Rahaq2_0469 primosomal replication protein N
Rahaq2_3393 primosomal replication protein N''
Rahaq2_3475 exonuclease SbcC
Rahaq2_3474 exonuclease SbcD
Rahaq2_3913 DNA repair protein RadA
Rahaq2_0004 recF protein
Rahaq2_4493 ATP-dependent DNA helicase RecG
Rahaq2_0069 putative transcriptional regulator with HTH domain
Rahaq2_3510 DNA repair protein RecO
Rahaq2_3387 recombination protein RecR
Rahaq2_3527 DNA repair protein RecN
Rahaq2_3480 DNA recombination-dependent growth factor C
Rahaq2_1860 CRISPR-associated endonuclease Cas1
Rahaq2_1384 DNA/RNA helicase, superfamily II
Rahaq2_1365 DNA gyrase, A subunit
Rahaq2_0005 DNA gyrase, B subunit
Rahaq2_2072 DNA topoisomerase I, bacterial
Rahaq2_4228 bacterial nucleoid DNA-binding protein
Rahaq2_3427 bacterial nucleoid DNA-binding protein
Rahaq2_4130 Factor for inversion stimulation Fis, transcriptional activator
Rahaq2_2859 integration host factor, alpha subunit
Rahaq2_1566 integration host factor, beta subunit
Rahaq2_4341 ATP-dependent DNA helicase RecQ
Rahaq2_2031 DNA-binding protein H-NS
Rahaq2_4731 DNA-binding protein H-NS
Rahaq2_1029 nucleotidyltransferase/DNA polymerase involved in DNA repair
Rahaq2_4855 nucleotidyltransferase/DNA polymerase involved in DNA repair
Rahaq2_4854 SOS response transcriptional repressor, RecA-mediated autopeptidase
Rahaq2_4196 SOS regulatory protein LexA
Rahaq2_3852 DNA polymerase elongation subunit (family B)
Rahaq2_2989 DinI-like family
Rahaq2_0717 hypothetical protein
Rahaq2_4380 ATP-dependent DNA helicase Rep
Rahaq2_1613 DNA/RNA helicase, superfamily I
Rahaq2_1422 DNA helicase, Rad3
Rahaq2_2146 DNA helicase, Rad3
Rahaq2_0801 ribonucleoside-diphosphate reductase, alpha subunit
Rahaq2_1362 ribonucleoside-diphosphate reductase, alpha subunit
Rahaq2_1361 ribonucleotide reductase, beta subunit
Rahaq2_0800 ribonucleotide reductase, beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:raq03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Rahnella aquatilis CIP 78.65 = ATCC 33071