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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:rer03030]
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03410 Base excision repair [PATH:rer03410]
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03420 Nucleotide excision repair [PATH:rer03420]
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03430 Mismatch repair [PATH:rer03430]
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03440 Homologous recombination [PATH:rer03440]
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 RER_58300 ssb; single-stranded DNA-binding protein
RER_38370 putative single-stranded DNA-binding protein
RER_00040 recF; DNA replication and repair protein RecF
RER_37130 recO; DNA repair protein RecO
RER_03910 recR; recombination protein RecR
RER_27530 recA; RecA protein
RER_33220 polA; DNA polymerase I
RER_29240 ruvA; Holliday junction DNA helicase RuvA
RER_29250 ruvB; Holliday junction DNA helicase RuvB
RER_29230 ruvC; Holliday junction endonuclease RuvC
RER_22810 conserved hypothetical protein
RER_24240 recG; ATP-dependent DNA helicase RecG
RER_08580 recB; exodeoxyribonuclease V beta chain
RER_08570 recC; exodeoxyribonuclease V gamma chain
RER_08590 recD; exodeoxyribonuclease V alpha chain
RER_35310 dnaE; DNA polymerase III alpha subunit
RER_00020 dnaN; DNA polymerase III beta subunit
RER_03760 dnaX; DNA polymerase III gamma/tau subunit
RER_37690 holA; putative DNA polymerase III delta subunit
RER_05140 holB; putative DNA polymerase III delta' subunit
RER_49910 putative exonuclease
RER_35910 dnaQ; putative DNA polymerase III epsilon subunit
RER_30120 priA; putative primosomal protein n'
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K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:rer03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:rer03000]
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03021 Transcription machinery [BR:rer03021]
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03019 Messenger RNA biogenesis [BR:rer03019]
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03041 Spliceosome
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03011 Ribosome [BR:rer03011]
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03009 Ribosome biogenesis [BR:rer03009]
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03016 Transfer RNA biogenesis [BR:rer03016]
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03012 Translation factors [BR:rer03012]
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03110 Chaperones and folding catalysts [BR:rer03110]
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04131 Membrane trafficking [BR:rer04131]
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04121 Ubiquitin system [BR:rer04121]
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03051 Proteasome [BR:rer03051]
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03032 DNA replication proteins [BR:rer03032]
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03036 Chromosome and associated proteins [BR:rer03036]
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03400 DNA repair and recombination proteins [BR:rer03400]
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RER_52360 probable methylated-DNA--protein-cysteine methyltransferase
RER_52380 ogt; methylated-DNA--protein-cysteine methyltransferase
RER_45790 phr; deoxyribodipyrimidine photo-lyase
RER_24200 ung; uracil-DNA glycosylase
RER_32710 putative 3-methyladenine DNA glycosylase
RER_06700 mutY; putative adenine glycosylase
RER_04820 nth; endonuclease III
RER_46470 putative ATP-dependent DNA helicase
RER_41940 NTP pyrophosphohydrolase
RER_12260 conserved hypothetical protein
RER_14770 conserved hypothetical protein
RER_34820 conserved hypothetical protein
RER_15040 conserved hypothetical protein
RER_56880 putative hydrolase
RER_50620 putative hydrolase
RER_28220 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
RER_54050 putative alkylated DNA repair protein
RER_42130 mug; G/U mismatch-specific DNA glycosylase
RER_52350 alkA; 3-methyladenine-DNA glycosylase II
RER_41640 tag; 3-methyladenine-DNA glycosylase I
RER_44570 putative DNA glycosylase
RER_24320 mutM; formamidopyrimidine-DNA glycosylase/AP lyase
RER_20980 putative DNA glycosylase
RER_38180 putative DNA glycosylase
RER_20070 exoA; putative exodeoxyribonuclease
RER_14900 xthA; putative exodeoxyribonuclease III
RER_23800 ligA; NAD(+)-dependent DNA ligase
RER_33220 polA; DNA polymerase I
RER_33000 uvrA; UvrABC system protein A
RER_33080 uvrB; UvrABC system protein B
RER_30250 uvrC; UvrABC system protein C
RER_22240 uvrD2; probable ATP-dependent DNA helicase UvrD2
RER_44320 uvrD1; ATP-dependent DNA helicase UvrD1
RER_22190 putative ATP-dependent DNA helicase
RER_17330 rpoB; DNA-directed RNA polymerase beta chain
RER_17340 rpoC; DNA-directed RNA polymerase beta' chain
RER_18810 rpoA; DNA-directed RNA polymerase alpha chain
RER_30090 rpoZ; DNA-directed RNA polymerase omega chain
RER_43010 mfd; transcription-repair coupling factor
RER_42360 xseA; putative exodeoxyribonuclease VII large subunit
RER_42370 xseB; putative exodeoxyribonuclease VII small subunit
RER_35310 dnaE; DNA polymerase III alpha subunit
RER_00020 dnaN; DNA polymerase III beta subunit
RER_37690 holA; putative DNA polymerase III delta subunit
RER_05140 holB; putative DNA polymerase III delta' subunit
RER_49910 putative exonuclease
RER_35910 dnaQ; putative DNA polymerase III epsilon subunit
RER_03760 dnaX; DNA polymerase III gamma/tau subunit
RER_58300 ssb; single-stranded DNA-binding protein
RER_38370 putative single-stranded DNA-binding protein
RER_03240 vsr; putative DNA mismatch endonuclease
RER_08580 recB; exodeoxyribonuclease V beta chain
RER_08570 recC; exodeoxyribonuclease V gamma chain
RER_08590 recD; exodeoxyribonuclease V alpha chain
RER_27530 recA; RecA protein
RER_29240 ruvA; Holliday junction DNA helicase RuvA
RER_29250 ruvB; Holliday junction DNA helicase RuvB
RER_29230 ruvC; Holliday junction endonuclease RuvC
RER_22810 conserved hypothetical protein
RER_30120 priA; putative primosomal protein n'
RER_42310 sbcC; probable nuclease SbcCD subunit C
RER_42320 sbcD; probable nuclease SbcCD subunit D
RER_06840 radA; putative DNA repair protein RadA
RER_00040 recF; DNA replication and repair protein RecF
RER_24240 recG; ATP-dependent DNA helicase RecG
RER_37130 recO; DNA repair protein RecO
RER_03910 recR; recombination protein RecR
RER_32650 recN; DNA repair protein RecN
RER_38620 conserved hypothetical protein
RER_30620 DNA end-binding protein Ku
RER_45220 ligD; ATP-dependent DNA ligase LigD
RER_pREL1-01040 putative ATP-dependent DNA ligase
RER_00100 gyrA; DNA gyrase subunit A
RER_00090 gyrB; DNA gyrase subunit B
RER_05130 topA; DNA topoisomerase I
RER_24100 hup; putative DNA-binding protein HU
RER_37840 putative ATP-dependent DNA helicase
RER_37190 dinB; DNA polymerase IV
RER_35400 dinB; DNA polymerase IV
RER_27760 lexA; LexA repressor
RER_53970 lexA; LexA repressor
RER_19530 conserved hypothetical protein
RER_19790 dnaE2; error-prone DNA polymerase
RER_27540 recX; regulatory protein RecX
RER_38870 dinG; probable ATP-dependent DNA helicase DinG
RER_20990 putative ATP-dependent helicase
RER_24110 mutT; NTP pyrophosphohydrolase MutT
RER_32610 nudF; putative ADP-ribose pyrophosphatase
RER_23520 nrdE; ribonucleoside-diphosphate reductase alpha chain
RER_23530 nrdF; ribonucleoside-diphosphate reductase beta chain
RER_19590 conserved hypothetical protein
RER_26350 conserved hypothetical protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:rer03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Rhodococcus erythropolis PR4