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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:rme03030]
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 Rmet_2209 dnaQ; DNA polymerase III epsilon subunit
Rmet_3922 ydjQ; DNA polymerase III, epsilon subunit
Rmet_0754 dnaE; DNA polymerase III alpha subunit
Rmet_2129 dnaX; DNA polymerase III tau/gamma subunit
Rmet_1827 holB; DNA polymerase III, delta prime subunit
Rmet_2971 holA; DNA polymerase III, delta subunit
Rmet_2806 holC; DNA polymerase III chi subunit
Rmet_0002 dnaN; DNA polymerase III, beta subunit
Rmet_1975 dnaB; replicative DNA helicase
Rmet_2607 dnaG; DNA primase
Rmet_6278 traC2; Single-stranded DNA-binding protein (Ssb/TraC2)(plasmid backbone)
Rmet_2297 ssb2; single-stranded DNA binding protein
Rmet_0315 ssb1; Single-stranded DNA-binding protein (Helix-destabilizing protein)
Rmet_2208 rnhA; ribonuclease HI, degrades RNA of DNA-RNA hybrids
Rmet_1449 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids
Rmet_2624 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
Rmet_1428 ligA; DNA ligase, NAD(+)-dependent
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K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03410 Base excision repair [PATH:rme03410]
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03420 Nucleotide excision repair [PATH:rme03420]
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03430 Mismatch repair [PATH:rme03430]
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Rmet_1075 mutS; methyl-directed mismatch repair protein
Rmet_2908 mutL; methyl-directed mismatch repair protein
Rmet_2629 uvrD; DNA-dependent ATPase I and helicase II
Rmet_0232 putative ATP-dependent DNA helicase
Rmet_0538 xseA; exonuclease VII, large subunit
Rmet_2617 xseB; Exonuclease VII small subunit
Rmet_1038 recJ; ssDNA exonuclease, 5' --> 3'-specific
Rmet_6278 traC2; Single-stranded DNA-binding protein (Ssb/TraC2)(plasmid backbone)
Rmet_2297 ssb2; single-stranded DNA binding protein
Rmet_0315 ssb1; Single-stranded DNA-binding protein (Helix-destabilizing protein)
Rmet_0754 dnaE; DNA polymerase III alpha subunit
Rmet_0002 dnaN; DNA polymerase III, beta subunit
Rmet_2129 dnaX; DNA polymerase III tau/gamma subunit
Rmet_2971 holA; DNA polymerase III, delta subunit
Rmet_1827 holB; DNA polymerase III, delta prime subunit
Rmet_2209 dnaQ; DNA polymerase III epsilon subunit
Rmet_3922 ydjQ; DNA polymerase III, epsilon subunit
Rmet_2806 holC; DNA polymerase III chi subunit
Rmet_1428 ligA; DNA ligase, NAD(+)-dependent
Rmet_5483 dam; DNA adenine methylase
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K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
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03440 Homologous recombination [PATH:rme03440]
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Rmet_1038 recJ; ssDNA exonuclease, 5' --> 3'-specific
Rmet_6278 traC2; Single-stranded DNA-binding protein (Ssb/TraC2)(plasmid backbone)
Rmet_2297 ssb2; single-stranded DNA binding protein
Rmet_0315 ssb1; Single-stranded DNA-binding protein (Helix-destabilizing protein)
Rmet_2416 recO; DNA repair protein recO (Recombination protein O)
Rmet_2127 recR; gap repair protein
Rmet_0466 recA; DNA strand exchange and recombination protein with protease and nuclease activity
Rmet_2624 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
Rmet_0424 ruvA; component of RuvABC resolvasome, regulatory subunit
Rmet_0423 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome
Rmet_0426 ruvC; component of RuvABC resolvasome, endonuclease
Rmet_2942 recG; ATP-dependent DNA helicase
Rmet_0754 dnaE; DNA polymerase III alpha subunit
Rmet_0002 dnaN; DNA polymerase III, beta subunit
Rmet_2129 dnaX; DNA polymerase III tau/gamma subunit
Rmet_2971 holA; DNA polymerase III, delta subunit
Rmet_1827 holB; DNA polymerase III, delta prime subunit
Rmet_2209 dnaQ; DNA polymerase III epsilon subunit
Rmet_3922 ydjQ; DNA polymerase III, epsilon subunit
Rmet_2806 holC; DNA polymerase III chi subunit
Rmet_3490 priA; Primosome factor n' (replication factor Y)
Rmet_1978 priB; primosomal replication protein N (priB-like)
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:rme03000]
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03021 Transcription machinery [BR:rme03021]
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03019 Messenger RNA biogenesis [BR:rme03019]
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03041 Spliceosome
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03011 Ribosome [BR:rme03011]
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03009 Ribosome biogenesis [BR:rme03009]
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03016 Transfer RNA biogenesis [BR:rme03016]
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03012 Translation factors [BR:rme03012]
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03110 Chaperones and folding catalysts [BR:rme03110]
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04131 Membrane trafficking [BR:rme04131]
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04121 Ubiquitin system [BR:rme04121]
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03051 Proteasome [BR:rme03051]
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03032 DNA replication proteins [BR:rme03032]
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Rmet_2208 rnhA; ribonuclease HI, degrades RNA of DNA-RNA hybrids
Rmet_4749 hupB; Histone-like bacterial DNA-binding protein
Rmet_3538 hup; histone-like DNA-binding protein (HU)
Rmet_6397 hupB; DNA-binding protein Hu-beta (bacterial histone-like DNA-binding protein)
Rmet_1166 ihfA; integration host factor, alpha subunit 1 (IHF-alpha 1)
Rmet_0723 ihfB; integration host factor beta subunit
Rmet_0001 dnaA; chromosomal replication initiator protein DnaA
Rmet_1975 dnaB; replicative DNA helicase
Rmet_2607 dnaG; DNA primase
Rmet_6278 traC2; Single-stranded DNA-binding protein (Ssb/TraC2)(plasmid backbone)
Rmet_2297 ssb2; single-stranded DNA binding protein
Rmet_0315 ssb1; Single-stranded DNA-binding protein (Helix-destabilizing protein)
Rmet_0754 dnaE; DNA polymerase III alpha subunit
Rmet_0002 dnaN; DNA polymerase III, beta subunit
Rmet_2806 holC; DNA polymerase III chi subunit
Rmet_2971 holA; DNA polymerase III, delta subunit
Rmet_1827 holB; DNA polymerase III, delta prime subunit
Rmet_2209 dnaQ; DNA polymerase III epsilon subunit
Rmet_3922 ydjQ; DNA polymerase III, epsilon subunit
Rmet_2129 dnaX; DNA polymerase III tau/gamma subunit
Rmet_1449 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids
Rmet_2624 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
Rmet_1428 ligA; DNA ligase, NAD(+)-dependent
Rmet_5483 dam; DNA adenine methylase
Rmet_2912 hda; ATPase regulatory factor involved in DnaA inactivation
Rmet_0713 gyrA; DNA gyrase (type II topoisomerase), subunit A
Rmet_0003 gyrB; DNA gyrase, subunit B
Rmet_2519 parC; DNA topoisomerase IV, subunit A
Rmet_2521 parE; DNA topoisomerase IV, subunit B
Rmet_2298 topB2; DNA topoisomerase III
Rmet_3569 topB; DNA topoisomerase III
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K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K10763 hda; DnaA-homolog protein
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
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03036 Chromosome and associated proteins [BR:rme03036]
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03400 DNA repair and recombination proteins [BR:rme03400]
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Rmet_3767 ogt2; O-6-alkylguanine-DNA:cysteine-protein methyltransferase
Rmet_0520 ogt1; Methylated-DNA (protein)-cysteine S-methyltransferase
Rmet_5913 ogt3; Methylated-DNA-(protein)-cysteine S-methyltransferase
Rmet_2745 phr; deoxyribodipyrimidine photolyase, FAD-binding protein
Rmet_3183 ung; uracil-DNA-glycosylase
Rmet_0295 mutY; A/G-specific adenine DNA glycosylase
Rmet_1014 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
Rmet_3115 mutT; mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase)
Rmet_5170 NUDIX hydrolase
Rmet_2889 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase
Rmet_3765 ada; fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase
Rmet_3769 alkB1; alkylated DNA repair protein alk
Rmet_5268 alkB2; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions
Rmet_1397 DNA polymerase bacteriophage-type,uracil-DNA glycosylase superfamily
Rmet_3766 alkA; DNA-3-methyladenine glycosylase
Rmet_1086 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
Rmet_5912 Transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase
Rmet_3404 tag; 3-methyl-adenine DNA glycosylase I, constitutive
Rmet_0293 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
Rmet_1189 xthA2; exodeoxyribonuclease III (xth)
Rmet_4910 xthA3; Exodeoxyribonuclease III
Rmet_0149 xthA1; Exodeoxyribonuclease III
Rmet_1038 recJ; ssDNA exonuclease, 5' --> 3'-specific
Rmet_1428 ligA; DNA ligase, NAD(+)-dependent
Rmet_2624 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
Rmet_4549 uvrA2; Excinuclease ABC, A subunit (UvrA family protein)
Rmet_0313 uvrA1; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
Rmet_1019 uvrB; excinuclease of nucleotide excision repair, DNA damage recognition component
Rmet_2410 uvrC; excinuclease UvrABC, endonuclease subunit C
Rmet_2629 uvrD; DNA-dependent ATPase I and helicase II
Rmet_0232 putative ATP-dependent DNA helicase
Rmet_3334 rpoB; RNA polymerase, beta subunit
Rmet_3333 rpoC; RNA polymerase, beta prime subunit
Rmet_3291 rpoA; RNA polymerase, alpha subunit
Rmet_0857 rpoZ; DNA-directed RNA polymerase omega subunit
Rmet_1955 mfd; transcription-repair coupling factor
Rmet_1075 mutS; methyl-directed mismatch repair protein
Rmet_2908 mutL; methyl-directed mismatch repair protein
Rmet_0538 xseA; exonuclease VII, large subunit
Rmet_2617 xseB; Exonuclease VII small subunit
Rmet_0754 dnaE; DNA polymerase III alpha subunit
Rmet_0002 dnaN; DNA polymerase III, beta subunit
Rmet_2806 holC; DNA polymerase III chi subunit
Rmet_2971 holA; DNA polymerase III, delta subunit
Rmet_1827 holB; DNA polymerase III, delta prime subunit
Rmet_2209 dnaQ; DNA polymerase III epsilon subunit
Rmet_3922 ydjQ; DNA polymerase III, epsilon subunit
Rmet_2129 dnaX; DNA polymerase III tau/gamma subunit
Rmet_6278 traC2; Single-stranded DNA-binding protein (Ssb/TraC2)(plasmid backbone)
Rmet_2297 ssb2; single-stranded DNA binding protein
Rmet_0315 ssb1; Single-stranded DNA-binding protein (Helix-destabilizing protein)
Rmet_5483 dam; DNA adenine methylase
Rmet_3366 hypothetical protein
Rmet_6593 hypothetical protein
Rmet_0466 recA; DNA strand exchange and recombination protein with protease and nuclease activity
Rmet_0424 ruvA; component of RuvABC resolvasome, regulatory subunit
Rmet_0423 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome
Rmet_0426 ruvC; component of RuvABC resolvasome, endonuclease
Rmet_3490 priA; Primosome factor n' (replication factor Y)
Rmet_1978 priB; primosomal replication protein N (priB-like)
Rmet_3664 sbcC; exonuclease dsDNA SbcC, ATP-dependent, C subunit
Rmet_6218 sbcC; ATPase involved in DNA repair
Rmet_3663 sbcD; exonuclease dsDNA SbcCD, ATP-dependent, D subunit
Rmet_6220 sbcD; DNA repair exonuclease
Rmet_1401 radA; DNA repair protein RadA (ATP-dependent serine protease, S16 family)
Rmet_2942 recG; ATP-dependent DNA helicase
Rmet_2416 recO; DNA repair protein recO (Recombination protein O)
Rmet_2127 recR; gap repair protein
Rmet_0998 recN; recombination and repair protein
Rmet_3084 rdgC; Recombination-associated protein rdgC (DNA recombination-dependent growth factor C)
Rmet_2131 addA; UvrD/REP helicase
Rmet_2132 addB; ATP-dependent nuclease, subunit B
Rmet_0786 yjgR; putative ATPase
Rmet_0713 gyrA; DNA gyrase (type II topoisomerase), subunit A
Rmet_0003 gyrB; DNA gyrase, subunit B
Rmet_4749 hupB; Histone-like bacterial DNA-binding protein
Rmet_3538 hup; histone-like DNA-binding protein (HU)
Rmet_6397 hupB; DNA-binding protein Hu-beta (bacterial histone-like DNA-binding protein)
Rmet_0428 Putative Fis-like DNA-binding protein
Rmet_1166 ihfA; integration host factor, alpha subunit 1 (IHF-alpha 1)
Rmet_0723 ihfB; integration host factor beta subunit
Rmet_3328 recQ; ATP-dependent DNA helicase
Rmet_3677 stpA; Histone-like nucleoid-structuring protein HNS-like: transcriptional regulator
Rmet_4935 putative H-NS histon-like DNA-binding protein
Rmet_5562 histone-like nucleoid-structuring protein H-NS
Rmet_4462 hns; Histone-like nucleoid-structuring protein H-NS
Rmet_3545 dinB; UMUC-like DNA-repair protein; DNA polymerase IV
Rmet_1981 lexA; DNA-binding transcriptional repressor of SOS regulon
Rmet_1645 polB; DNA polymerase II
Rmet_4128 imuA; DNA damage-inducible mutagenesis protein
Rmet_4129 imuB; nucleotidyltransferase/DNA polymerase involved in DNA repair
Rmet_4130 dnaE2; DNA polymerase III alpha subunit
Rmet_0467 recX; regulatory protein for RecA
Rmet_3478 rep; DNA helicase and single-stranded DNA-dependent ATPase
Rmet_5487 putative ATP-dependent DNA helicase Rep
Rmet_1235 yoaA; putative ATP-dependent helicase
Rmet_2130 nrdJ; ribonucleotide reductase, coenzyme B12-dependent
Rmet_3088 nrdA; Ribonucleoside-diphosphate reductase alpha subunit
Rmet_3087 nrdB; Ribonucleoside-diphosphate reductase beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K03546 sbcC; DNA repair protein SbcC/Rad50
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:rme03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Cupriavidus metallidurans