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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:sef03030]
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03410 Base excision repair [PATH:sef03410]
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 UMN798_1512 nth; endonuclease III
UMN798_2854 ung; Uracil-DNA glycosylase
UMN798_3380 mutY; A/G-specific adenine glycosylase
UMN798_4047 mutM; formamidopyrimidine-DNA glycosylase
UMN798_0787 nei; endonuclease VIII, DNA N-glycosylase with an AP lyase activity
UMN798_2294 alkA; DNA-3-methyladenine glycosidase II
UMN798_3955 tag; 3-methyladenine DNA glycosylase I, constitutive
UMN798_3494 mug; G/U mismatch-specific DNA glycosylase
UMN798_1358 xthA; exodeoxyribonuclease III
UMN798_2379 nfo; putative endonuclease IV
UMN798_4339 polA; DNA polymerase I
UMN798_3306 recJ; single-stranded DNA-specific exonuclease
UMN798_4061 putative DNA ligase
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K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03420 Nucleotide excision repair [PATH:sef03420]
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03430 Mismatch repair [PATH:sef03430]
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03440 Homologous recombination [PATH:sef03440]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:sef03000]
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03021 Transcription machinery [BR:sef03021]
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03019 Messenger RNA biogenesis [BR:sef03019]
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03041 Spliceosome
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03011 Ribosome [BR:sef03011]
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03009 Ribosome biogenesis [BR:sef03009]
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03016 Transfer RNA biogenesis [BR:sef03016]
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03012 Translation factors [BR:sef03012]
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03110 Chaperones and folding catalysts [BR:sef03110]
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04131 Membrane trafficking [BR:sef04131]
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04121 Ubiquitin system [BR:sef04121]
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03051 Proteasome [BR:sef03051]
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03032 DNA replication proteins [BR:sef03032]
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03036 Chromosome and associated proteins [BR:sef03036]
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03400 DNA repair and recombination proteins [BR:sef03400]
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UMN798_1743 ogt; O6-methylguanine-DNA-alkyltransferase
UMN798_0767 phrB; deoxyribodipyrimidine photolyase
UMN798_2854 ung; Uracil-DNA glycosylase
UMN798_3380 mutY; A/G-specific adenine glycosylase
UMN798_1512 nth; endonuclease III
UMN798_0150 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase
UMN798_4052 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
UMN798_2447 ada; ADA regulatory protein
UMN798_2446 alkB; AlkB protein
UMN798_3494 mug; G/U mismatch-specific DNA glycosylase
UMN798_2294 alkA; DNA-3-methyladenine glycosidase II
UMN798_3955 tag; 3-methyladenine DNA glycosylase I, constitutive
UMN798_4047 mutM; formamidopyrimidine-DNA glycosylase
UMN798_0787 nei; endonuclease VIII, DNA N-glycosylase with an AP lyase activity
UMN798_1358 xthA; exodeoxyribonuclease III
UMN798_2379 nfo; putative endonuclease IV
UMN798_4515 nfi; putative endonuclease
UMN798_3306 recJ; single-stranded DNA-specific exonuclease
UMN798_4061 putative DNA ligase
UMN798_4339 polA; DNA polymerase I
UMN798_4613 uvrA; excision nuclease subunit A
UMN798_0867 uvrB; excision nuclease ABC subunit B
UMN798_2053 uvrC; UvrABC system protein C
UMN798_1365 hypothetical protein
UMN798_4289 uvrD; DNA helicase II
UMN798_4498 rpoB; DNA-directed RNA polymerase, beta-subunit
UMN798_4499 rpoC; DNA-directed RNA polymerase, beta'-subunit
UMN798_3714 pez; DNA-directed RNA polymerase alpha chain
UMN798_4063 rpoZ; DNA-directed RNA polymerase omega chain
UMN798_1263 mfd; transcription-repair coupling factor (TrcF)
UMN798_3157 mutS; DNA mismatch repair protein
UMN798_4720 mutL; DNA mismatch repair protein
UMN798_3265 mutH; DNA mismatch repair protein mutH
UMN798_2233 sbcB; exodeoxyribonuclease I
UMN798_2707 xseA; putative exodeoxyribonuclease VII large subunit
UMN798_0467 xseB; exodeoxyribonuclease small subunit
UMN798_1978 exoX; exodeoxyribonuclease X
UMN798_0252 dnaE; DNA polymerase III, alpha chain
UMN798_4172 dnaN; DNA polymerase III beta-subunit
UMN798_4846 holC; DNA polymerase III, chi subunit
UMN798_0699 holA; DNA polymerase III, delta subunit
UMN798_1248 holB; DNA polymerase III, delta' subunit
UMN798_0288 dnaQ; DNA polymerase III epsilon subunit
UMN798_0528 dnaX; DNA polymerase III subunits gamma and tau
UMN798_4928 holD; DNA polymerase III, psi subunit
UMN798_1976 holE; DNA polymerase III, theta subunit
UMN798_p0077 putative inner membrane protein
UMN798_4614 ssb; single-strand DNA-binding protein
UMN798_p0079 ssbB; single-strand DNA binding protein
UMN798_2951 DNA adenine methylase
UMN798_3786 dam; DNA adenine methylase
UMN798_2098 vsr; patch repair protein
UMN798_3253 recB; exonuclease V subunit
UMN798_3255 recC; exonuclease V subunit
UMN798_3252 recD; exonuclease V alpha-subunit
UMN798_3073 recA; RecA protein
UMN798_1997 ruvA; Holliday junction DNA helicase ruvA
UMN798_1996 ruvB; Holliday junction DNA helicase ruvB
UMN798_2002 ruvC; Crossover junction endodeoxyribonuclease ruvC
UMN798_4439 priA; primosomal protein replication factor
UMN798_0524 priC; primosomal replication protein N
UMN798_4918 dnaT; primosomal protein I
UMN798_0434 sbcC; exonuclease SbcC
UMN798_0435 sbcD; exonuclease SbcD
UMN798_4954 radA; putative DNA repair protein
UMN798_4171 recF; recF protein
UMN798_4067 recG; ATP-dependent DNA helicase
UMN798_2784 recO; DNA repair protein RecO
UMN798_0530 recR; recombination protein RecR
UMN798_2903 recN; DNA repair protein
UMN798_0431 rdgC; recombination associated protein RdgC
UMN798_3190 hypothetical protein
UMN798_2403 yejH; putative helicase
UMN798_2453 gyrA; DNA gyrase subunit A
UMN798_4170 gyrB; DNA gyrase subunit B
UMN798_1806 topA; DNA topoisomerase I, omega protein I
UMN798_4517 hupA; histone like DNA-binding protein HU-alpha (NS2) (HU-2)
UMN798_0495 hupB; DNA-binding protein HU-beta
UMN798_1051 recE; exodeoxyribonuclease viii
UMN798_2840 recE; exodeoxyribonuclease viii
UMN798_3682 fis; Fis DNA-binding protein
UMN798_1395 himA; integration host factor alpha-subunit
UMN798_1020 himD; integration host factor beta-subunit (IHF-beta)
UMN798_4297 recQ; ATP-dependent DNA helicase
UMN798_1843 hns; DNA-binding protein (histone-like protein Hlp-II)
UMN798_0343 dbh; DNA polymerase IV
UMN798_2108 umuC; DNA repair protein
UMN798_p0066 umuC; DNA polymerase V subunit UmuC
UMN798_2109 umuD; DNA repair protein
UMN798_p0067 samA; SamA
UMN798_4596 lexA; LexA repressor
UMN798_0107 polB; DNA polymerase II
UMN798_1209 dinI; damage-inducible protein
UMN798_1060 DNA Damage Inducible Protein
UMN798_2830 putative damage-inducible protein
UMN798_2948 putative bacteriophage sos operon Tum protein
UMN798_3072 oraA; Regulatory protein recX
UMN798_p0062 putative cytoplasmic protein
UMN798_3811 hypothetical protein
UMN798_4249 rep; ATP-dependent DNA helicase
UMN798_1116 helD; helicase IV (75 kD helicase)
UMN798_0890 dinG; putative ATP-dependent helicase DinG
UMN798_1917 putative ATP-dependent helicase
UMN798_2458 nrdA; ribonucleoside-diphosphate reductase 1 alpha chain
UMN798_3050 nrdE; ribonucleoside-diphosphate reductase 2 alpha chain
UMN798_2459 nrdB; ribonucleoside-diphosphate reductase 1 beta chain
UMN798_3051 nrdF; ribonucleoside-diphosphate reductase 2 beta chain
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-]
K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-]
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K12149 dinI; DNA-damage-inducible protein I
K12149 dinI; DNA-damage-inducible protein I
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:sef03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Salmonella enterica subsp. enterica serovar Typhimurium 798