09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:sho03030]
03410 Base excision repair [PATH:sho03410]
SHJGH_5205 endonuclease III SHJGH_2333 putative uracil DNA glycosylase SHJGH_2520 uracil-DNA glycosylase SHJGH_5337 adenine glycosylase SHJGH_3007 3-methyladenine DNA glycosylase SHJGH_6450 formamidopyrimidine-DNA glycosylase SHJGH_5095 hypothetical protein SHJGH_7623 formamidopyrimidine-DNA glycosylase SHJGH_3885 endonuclease VIII and DNA N-glycosylase with an AP lyase activity SHJGH_6607 DNA glycosylase SHJGH_7179 ADA-like regulatory protein SHJGH_6982 ADA-like regulatory protein SHJGH_6004 DNA-3-methyladenine glycosylase I SHJGH_2457 G/U mismatch-specific DNA glycosylase SHJGH_3223 hypothetical protein SHJGH_5435 DNA polymerase related protein SHJGH_4407 exodeoxyribonuclease SHJGH_7148 exonuclease SHJGH_3360 endonuclease IV SHJGH_3241 DNA polymerase I SHJGH_6346 NAD-dependent DNA ligase LigA
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
03420 Nucleotide excision repair [PATH:sho03420]
03430 Mismatch repair [PATH:sho03430]
03440 Homologous recombination [PATH:sho03440]
03450 Non-homologous end-joining [PATH:sho03450]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:sho03000]
03021 Transcription machinery [BR:sho03021]
03019 Messenger RNA biogenesis [BR:sho03019]
03041 Spliceosome
03011 Ribosome [BR:sho03011]
03009 Ribosome biogenesis [BR:sho03009]
03016 Transfer RNA biogenesis [BR:sho03016]
03012 Translation factors [BR:sho03012]
03110 Chaperones and folding catalysts [BR:sho03110]
04131 Membrane trafficking [BR:sho04131]
04121 Ubiquitin system [BR:sho04121]
03051 Proteasome [BR:sho03051]
03032 DNA replication proteins [BR:sho03032]
03036 Chromosome and associated proteins [BR:sho03036]
03400 DNA repair and recombination proteins [BR:sho03400]
SHJGH_3194 methylated-DNA--protein-cysteine S-methyltransferase SHJGH_7180 methylated-DNA-protein-cysteine S-methyltransferase SHJGH_6983 methylated-DNA-protein-cysteine methyltransferase SHJGH_1948 deoxyribodipyrimidine photolyase SHJGH_2333 putative uracil DNA glycosylase SHJGH_2520 uracil-DNA glycosylase SHJGH_3007 3-methyladenine DNA glycosylase SHJGH_5337 adenine glycosylase SHJGH_5205 endonuclease III SHJGH_4569 ATP-dependent DNA helicase SHJGH_5258 hypothetical protein SHJGH_5408 hydrolase SHJGH_5958 mutT-like protein SHJGH_6677 DNA hydrolase SHJGH_4699 hypothetical protein SHJGH_8466 putative MutT family protein SHJGH_3899 hypothetical protein SHJGH_4839 MutT-like protein SHJGH_2105 hypothetical protein SHJGH_8076 hypothetical protein SHJGH_6726 deoxyuridine 5'-triphosphate nucleotidohydrolase SHJGH_2269 putative DNA repair protein SHJGH_2457 G/U mismatch-specific DNA glycosylase SHJGH_3223 hypothetical protein SHJGH_5435 DNA polymerase related protein SHJGH_7179 ADA-like regulatory protein SHJGH_6982 ADA-like regulatory protein SHJGH_6004 DNA-3-methyladenine glycosylase I SHJGH_6450 formamidopyrimidine-DNA glycosylase SHJGH_5095 hypothetical protein SHJGH_7623 formamidopyrimidine-DNA glycosylase SHJGH_3885 endonuclease VIII and DNA N-glycosylase with an AP lyase activity SHJGH_6607 DNA glycosylase SHJGH_4407 exodeoxyribonuclease SHJGH_7148 exonuclease SHJGH_3360 endonuclease IV SHJGH_7383 endonuclease SHJGH_6346 NAD-dependent DNA ligase LigA SHJGH_3241 DNA polymerase I SHJGH_3179 excinuclease ABC subunit A SHJGH_2002 putative excinuclease ABC subunit A SHJGH_7648 excinuclease ABC subunit A SHJGH_3191 excinuclease ABC subunit B SHJGH_3174 excinuclease ABC subunit C SHJGH_5661 ATP-dependent DNA helicase II SHJGH_6052 ATP-dependent DNA helicase SHJGH_6056 ATP-dependent DNA helicase SHJGH_5543 DNA-directed RNA polymerase subunit beta SHJGH_5544 DNA-directed RNA polymerase subunit beta SHJGH_5586 DNA-directed RNA polymerase subunit alpha SHJGH_2667 DNA-directed RNA polymerase subunit omega SHJGH_4344 transcriptional-repair coupling factor SHJGH_5910 exodeoxyribonuclease VII large subunit SHJGH_5909 exodeoxyribonuclease VII small subunit SHJGH_3307 DNA polymerase III subunit alpha SHJGH_4956 DNA polymerase III subunit beta SHJGH_5933 DNA polymerase III subunit beta SHJGH_3821 DNA-binding protein SHJGH_5233 DNA polymerase III subunit delta' SHJGH_3048 DNA polymerase III subunit epsilon SHJGH_2722 DNA polymerase III subunit epsilon SHJGH_6926 DNA polymerase III subunit epsilon SHJGH_4789 DNA polymerase III subunits gamma and tau SHJGH_4928 single-strand DNA-binding protein SHJGH_3957 single-strand DNA-binding protein SHJGH_4004 deoxyribonuclease SHJGH_6617 recombinase A SHJGH_2707 holliday junction DNA helicase SHJGH_2706 holliday junction DNA helicase SHJGH_2708 holliday junction resolvase SHJGH_2664 primosome assembly protein PriA SHJGH_2487 putative exonuclease SHJGH_2488 putative exonuclease SHJGH_5340 DNA repair protein RadA SHJGH_4958 recombination protein F SHJGH_6443 ATP-dependent DNA helicase SHJGH_3750 DNA repair protein RecO SHJGH_5169 recombination protein RecR SHJGH_2995 DNA recombination and repair protein SHJGH_p1054 CRISPR-associated Cas1 family protein SHJGH_4805 hypothetical protein SHJGH_6179 Ku70/Ku80 protein SHJGH_p1006 Ku70/Ku80 protein SHJGH_7216 hypothetical protein SHJGH_1851 putative ATP-dependent DNA ligase SHJGH_6178 DNA ligase SHJGH_6700 DNA topoisomerase IV subunit A SHJGH_4961 DNA gyrase subunit A SHJGH_6683 DNA topoisomerase IV subunit B SHJGH_4960 DNA gyrase subunit B SHJGH_5231 DNA topoisomerase I SHJGH_7825 hypothetical protein SHJGH_4186 DNA-binding protein Hu 1 SHJGH_6427 histone-like DNA binding protein SHJGH_6674 ATP-dependent DNA helicase SHJGH_5480 helicase SHJGH_7100 ATP-dependent DNA helicase, RecQ family SHJGH_2561 DNA polymerase IV SHJGH_8355 hypothetical protein SHJGH_6661 SOS regulatory protein LexA SHJGH_2951 DNA polymerase III, alpha chain SHJGH_6618 recombination regulator RecX SHJGH_2881 DNA polymerase beta SHJGH_6660 ATP-dependent helicase SHJGH_6608 ATP-dependent DNA helicase SHJGH_2986 ADP-ribose pyrophosphatase SHJGH_3545 ribonucleoside-diphosphate reductase alpha chain SHJGH_6102 ribonucleoside-diphosphate reductase alpha chain SHJGH_6663 vitamin B12-dependent ribonucleotide reductase SHJGH_3546 ribonucleoside-diphosphate reductase beta chain SHJGH_6101 ribonucleoside-diphosphate reductase beta chain
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K03546 sbcC; DNA repair protein SbcC/Rad50 K03547 sbcD; DNA repair protein SbcD/Mre11 K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K15342 cas1; CRISP-associated protein Cas1 K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K10979 ku; DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K02347 polX; DNA polymerase (family X) K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:sho03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Streptomyces hygroscopicus subsp. jinggangensis TL01 KEGG Orthology (KO) - Streptomyces hygroscopicus subsp. jinggangensis TL01