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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:tbo03030]
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03410 Base excision repair [PATH:tbo03410]
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03420 Nucleotide excision repair [PATH:tbo03420]
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03430 Mismatch repair [PATH:tbo03430]
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03440 Homologous recombination [PATH:tbo03440]
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 Thebr_1052 single-stranded-DNA-specific exonuclease RecJ
Thebr_2319 single-strand binding protein
Thebr_0004 DNA replication and repair protein RecF
Thebr_1391 DNA repair protein RecO
Thebr_2244 recombination protein RecR
Thebr_1220 recA protein
Thebr_1039 Holliday junction DNA helicase RuvA
Thebr_1040 Holliday junction DNA helicase RuvB
Thebr_1038 crossover junction endodeoxyribonuclease RuvC
Thebr_1334 ATP-dependent DNA helicase RecG
Thebr_1834 helicase, RecD/TraA family
Thebr_0699 DNA polymerase III, alpha subunit
Thebr_1243 DNA polymerase III, alpha subunit
Thebr_0002 DNA polymerase III, beta subunit
Thebr_2246 DNA polymerase III, subunits gamma and tau
Thebr_1440 DNA polymerase III, delta subunit
Thebr_2194 DNA polymerase III, delta prime subunit
Thebr_1350 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:tbo03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:tbo03000]
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03021 Transcription machinery [BR:tbo03021]
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03019 Messenger RNA biogenesis [BR:tbo03019]
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03041 Spliceosome
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03011 Ribosome [BR:tbo03011]
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03009 Ribosome biogenesis [BR:tbo03009]
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03016 Transfer RNA biogenesis [BR:tbo03016]
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03012 Translation factors [BR:tbo03012]
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03110 Chaperones and folding catalysts [BR:tbo03110]
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04131 Membrane trafficking [BR:tbo04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:tbo03032]
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03036 Chromosome and associated proteins [BR:tbo03036]
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03400 DNA repair and recombination proteins [BR:tbo03400]
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Thebr_0213 methylated-DNA/protein-cysteine methyltransferase
Thebr_1771 8-oxoguanine DNA glycosylase domain-containing protein
Thebr_0746 endonuclease III
Thebr_2332 NUDIX hydrolase
Thebr_1229 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Thebr_2215 phage SPO1 DNA polymerase-related protein
Thebr_2200 DNA-3-methyladenine glycosylase I
Thebr_1108 Xylose isomerase domain-containing protein TIM barrel
Thebr_1052 single-stranded-DNA-specific exonuclease RecJ
Thebr_1735 DNA ligase, NAD-dependent
Thebr_0585 excinuclease ABC, A subunit
Thebr_0584 excinuclease ABC, B subunit
Thebr_0589 excinuclease ABC, C subunit
Thebr_1736 ATP-dependent DNA helicase PcrA
Thebr_0376 DNA-directed RNA polymerase, beta subunit
Thebr_0377 DNA-directed RNA polymerase, beta' subunit
Thebr_0412 DNA-directed RNA polymerase, alpha subunit
Thebr_1352 DNA-directed RNA polymerase, omega subunit
Thebr_0175 transcription-repair coupling factor
Thebr_1203 DNA mismatch repair protein MutS
Thebr_0798 MutS2 family protein
Thebr_1204 DNA mismatch repair protein MutL
Thebr_1126 exodeoxyribonuclease VII, large subunit
Thebr_1127 exodeoxyribonuclease VII, small subunit
Thebr_0699 DNA polymerase III, alpha subunit
Thebr_1243 DNA polymerase III, alpha subunit
Thebr_0002 DNA polymerase III, beta subunit
Thebr_1440 DNA polymerase III, delta subunit
Thebr_2194 DNA polymerase III, delta prime subunit
Thebr_2246 DNA polymerase III, subunits gamma and tau
Thebr_2319 single-strand binding protein
Thebr_1822 DNA adenine methylase
Thebr_1834 helicase, RecD/TraA family
Thebr_1220 recA protein
Thebr_1039 Holliday junction DNA helicase RuvA
Thebr_1040 Holliday junction DNA helicase RuvB
Thebr_1038 crossover junction endodeoxyribonuclease RuvC
Thebr_1350 primosomal protein N'
Thebr_2057 SMC domain protein
Thebr_2058 nuclease SbcCD, D subunit
Thebr_0353 DNA repair protein RadA
Thebr_0004 DNA replication and repair protein RecF
Thebr_1334 ATP-dependent DNA helicase RecG
Thebr_1391 DNA repair protein RecO
Thebr_2244 recombination protein RecR
Thebr_1134 DNA repair protein RecN
Thebr_2059 recombination helicase AddA
Thebr_2060 ATP-dependent nuclease subunit B
Thebr_0140 CRISPR-associated protein Cas1
Thebr_0488 Ku protein
Thebr_0487 DNA polymerase LigD, ligase domain protein
Thebr_0011 DNA gyrase, A subunit
Thebr_0010 DNA topoisomerase IV, B subunit
Thebr_1293 DNA topoisomerase I
Thebr_0256 histone family protein DNA-binding protein
Thebr_0949 DEAD/DEAH box helicase domain protein
Thebr_2066 DNA-directed DNA polymerase
Thebr_1219 regulatory protein RecX
Thebr_0221 PHP domain protein
Thebr_0339 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
Thebr_1236 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:tbo03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Thermoanaerobacter brockii