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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:vcl03030]
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03410 Base excision repair [PATH:vcl03410]
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03420 Nucleotide excision repair [PATH:vcl03420]
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03430 Mismatch repair [PATH:vcl03430]
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03440 Homologous recombination [PATH:vcl03440]
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 VCLMA_A2121 Single-stranded-DNA-specific exonuclease RecJ
VCLMA_A0355 Single-stranded DNA-binding protein
VCLMA_A0012 recF; DNA recombination and repair protein RecF
VCLMA_A2163 DNA recombination and repair protein RecO
VCLMA_A0912 Recombination protein RecR
VCLMA_A0473 RecA protein
VCLMA_A0100 DNA polymerase I
VCLMA_A1595 Holliday junction DNA helicase RuvA
VCLMA_A1594 Holliday junction DNA helicase RuvB
VCLMA_A1596 Crossover junction endodeoxyribonuclease RuvC
VCLMA_A2401 ATP-dependent DNA helicase RecG
VCLMA_A2036 Exodeoxyribonuclease V beta chain RecB
VCLMA_A2037 Exodeoxyribonuclease V gamma chain RecC
VCLMA_A2035 Exodeoxyribonuclease V alpha chain RecD
VCLMA_A1968 DNA polymerase III alpha subunit
VCLMA_A0011 dnaN; DNA polymerase III beta subunit
VCLMA_A0910 DNA polymerase III subunits gamma and tau
VCLMA_A0814 DNA polymerase III delta subunit
VCLMA_A1754 DNA polymerase III delta prime subunit
VCLMA_A0263 DNA polymerase III epsilon subunit
VCLMA_A1134 DNA polymerase III epsilon subunit
VCLMA_A1957 DNA polymerase III epsilon subunit
VCLMA_A2202 DNA polymerase III chi subunit
VCLMA_A0577 DNA polymerase III psi subunit
VCLMA_A2369 Helicase PriA essential for oriC/DnaA-independent DNA replication
VCLMA_A1606 Primosomal replication protein N prime prime
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:vcl03000]
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03021 Transcription machinery [BR:vcl03021]
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03019 Messenger RNA biogenesis [BR:vcl03019]
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03041 Spliceosome
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03011 Ribosome [BR:vcl03011]
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03009 Ribosome biogenesis [BR:vcl03009]
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03016 Transfer RNA biogenesis [BR:vcl03016]
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03012 Translation factors [BR:vcl03012]
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03110 Chaperones and folding catalysts [BR:vcl03110]
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04131 Membrane trafficking [BR:vcl04131]
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04121 Ubiquitin system [BR:vcl04121]
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03051 Proteasome [BR:vcl03051]
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03032 DNA replication proteins [BR:vcl03032]
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03036 Chromosome and associated proteins [BR:vcl03036]
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03400 DNA repair and recombination proteins [BR:vcl03400]
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VCLMA_B0770 Methylated-DNA--protein-cysteine methyltransferase
VCLMA_A1225 Cryptochrome
VCLMA_B0049 Deoxyribodipyrimidine photolyase
VCLMA_A2070 Uracil-DNA glycosylase, family 1
VCLMA_A0409 A/G-specific adenine glycosylase
VCLMA_A0868 Endonuclease III
VCLMA_A2099 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase)
VCLMA_B0085 Hypothetical Nudix-like regulator
VCLMA_B0771 ADA regulatory protein
VCLMA_A1462 DNA-3-methyladenine glycosylase
VCLMA_A0193 Formamidopyrimidine-DNA glycosylase
VCLMA_A1609 Exodeoxyribonuclease III
VCLMA_A2071 Endonuclease IV
VCLMA_A2121 Single-stranded-DNA-specific exonuclease RecJ
VCLMA_A0829 DNA ligase
VCLMA_A0100 DNA polymerase I
VCLMA_A0352 Excinuclease ABC subunit A
VCLMA_A0876 Excinuclease ABC subunit B
VCLMA_A1065 Excinuclease ABC subunit C
VCLMA_A0162 uvrD; ATP-dependent DNA helicase UvrD/PcrA
VCLMA_A2267 DNA-directed RNA polymerase alpha subunit
VCLMA_A2399 DNA-directed RNA polymerase omega subunit
VCLMA_A0466 DNA mismatch repair protein MutS
VCLMA_A0591 DNA mismatch repair endonuclease MutH
VCLMA_A1080 Exodeoxyribonuclease I
VCLMA_A0678 Exodeoxyribonuclease VII large subunit
VCLMA_A0762 Exodeoxyribonuclease VII small subunit
VCLMA_A1968 DNA polymerase III alpha subunit
VCLMA_A0011 dnaN; DNA polymerase III beta subunit
VCLMA_A2202 DNA polymerase III chi subunit
VCLMA_A0814 DNA polymerase III delta subunit
VCLMA_A1754 DNA polymerase III delta prime subunit
VCLMA_A0263 DNA polymerase III epsilon subunit
VCLMA_A1134 DNA polymerase III epsilon subunit
VCLMA_A1957 DNA polymerase III epsilon subunit
VCLMA_A0910 DNA polymerase III subunits gamma and tau
VCLMA_A0577 DNA polymerase III psi subunit
VCLMA_A0355 Single-stranded DNA-binding protein
VCLMA_A2321 Methyl-directed repair DNA adenine methylase
VCLMA_A2036 Exodeoxyribonuclease V beta chain RecB
VCLMA_A2037 Exodeoxyribonuclease V gamma chain RecC
VCLMA_A2035 Exodeoxyribonuclease V alpha chain RecD
VCLMA_A0473 RecA protein
VCLMA_A1595 Holliday junction DNA helicase RuvA
VCLMA_A1594 Holliday junction DNA helicase RuvB
VCLMA_A1596 Crossover junction endodeoxyribonuclease RuvC
VCLMA_A2369 Helicase PriA essential for oriC/DnaA-independent DNA replication
VCLMA_A1606 Primosomal replication protein N prime prime
VCLMA_B0319 Exonuclease SbcC
VCLMA_B0318 Exonuclease SbcD
VCLMA_A2054 DNA repair protein RadA
VCLMA_A0012 recF; DNA recombination and repair protein RecF
VCLMA_A2401 ATP-dependent DNA helicase RecG
VCLMA_A2163 DNA recombination and repair protein RecO
VCLMA_A0912 Recombination protein RecR
VCLMA_A0635 DNA recombination-dependent growth factor C
VCLMA_A1425 DNA or RNA helicase of superfamily II
VCLMA_A0238 DNA-binding protein HU-alpha
VCLMA_A1666 DNA-binding protein HU-beta
VCLMA_A0256 DNA-binding protein Fis
VCLMA_A1072 Integration host factor alpha subunit
VCLMA_A1661 Integration host factor beta subunit
VCLMA_A0168 recQ; ATP-dependent DNA helicase RecQ
VCLMA_A0984 DNA-binding protein H-NS
VCLMA_A2008 DNA polymerase IV
VCLMA_A0087 lexA; SOS-response repressor and protease LexA
VCLMA_A1063 DNA polymerase II
VCLMA_A0474 Regulatory protein RecX
VCLMA_B0502 DNA helicase IV
VCLMA_A1730 DinG family ATP-dependent helicase YoaA
VCLMA_A1604 ATP-dependent helicase DinG/Rad3
VCLMA_A1100 Ribonucleotide reductase of class Ia (aerobic), alpha subunit
VCLMA_A1099 Ribonucleotide reductase of class Ia (aerobic), beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03555 mutS; DNA mismatch repair protein MutS
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K03565 recX; regulatory protein
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:vcl03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Vibrio cholerae O1 LMA3984-4