KEGG   Aeromonas caviae: VI35_12615
Entry
VI35_12615        CDS       T05190                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
acav  Aeromonas caviae
Pathway
acav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VI35_12615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acav03019]
    VI35_12615
   03009 Ribosome biogenesis [BR:acav03009]
    VI35_12615
Enzymes [BR:acav01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VI35_12615
Messenger RNA biogenesis [BR:acav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     VI35_12615
Ribosome biogenesis [BR:acav03009]
 Prokaryotic type
  rRNA helicases
   VI35_12615
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 CMS1
Other DBs
NCBI-ProteinID: ATP90923
Position
complement(2700698..2702629)
AA seq 643 aa
MLAACLNLEESMSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLL
GQAQTGTGKTAAFALPLLSRLEAGNRNTQILVLAPTRELALQVAEACQRYAHHMPDFHVL
PIYGGASYETQTRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFI
DDVDWIMDQCPAGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQV
TGLHKLDAMTRLLEVESYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERT
VDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAIL
FVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMGEELEIYHNLV
NELIEEDSADPLELAAALAKLVQGDQPLLLDDSIPDPVFNAGNDRGGFERREFNDRGGRD
FGDRGDRPARRMPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRF
IGNIDIADDFSTVDLPKGMSAEVLEVIKKARVCQRPLQITRYTEVPAGGNTAPRPPRGDR
PFRGDRPFNKDRRPQGDRPFNKDRREGGFDKGRKFGGNKRRDS
NT seq 1932 nt   +upstreamnt  +downstreamnt
gtgttagccgcctgccttaatctggaagaatctatgtctgataccgaacaactgcccctt
tttagtgagcttggactggccgcgcctgtattgaaagcgctgcaggacgtgggctatgag
cgcccgtctcccatccaggccgcagcaattccccacctgatggcgggacacgatctgctg
gggcaggcacaaaccggtacagggaagaccgctgcttttgccttgcctctgttgtctcgt
ctggaagctggtaaccgcaacacccagatcctggtgctggccccgacccgcgagctggcc
ctgcaggtggcagaggcgtgccaacgctatgcccaccacatgcccgatttccacgtgctg
cccatctacggcggcgcttcctacgaaacccagacccgcgccctgcgccgcggtgctcag
gttgtcgtgggtaccccgggccgcgtgatggacctgatccgtcgcaagaacctggacctc
tccggtctgaaagccctggtgctggacgaagcggacgaaatgctgcgcatgggcttcatc
gacgacgtggactggatcatggatcagtgcccggccggtcgtcaggttgccctgttctct
gccaccatgccggagcagatccgtcgtgttgcccagaagcacctgaagcagcccaaagag
atcaagatcgcctccaagaccgcgaccgcaaccaccattcgccagcgttactggcaggtg
accggtctgcacaagctggacgccatgacccgtctgctggaagtggaatcctacgaagcc
ctgctggtgttcgtgcgtaccaagaacgccgccgaagaactggcaggcaagctggccgcc
cgtggtcacgcctgtgaagcgctgcacggcgacatcccgcagaagctgcgtgagcgtacc
gtcgacaagctgcgtcagggccagctggacattcttatcgccaccgacgtggtcgcccgc
ggtctggacgttgagcgcatcacccacgtggtgaactacgacatcccctacgacaccgaa
tcctatgttcaccgtatcggccgtaccggccgtgccggtcgcaagggtgaagccatcctg
ttcgtggcaccgcgcgagcgtcgcatgctgcgcgccatcgagcacgcaactcgtcaagcc
atcgagccgatgaagatgccgagcaccgaggacatcaaccagcaccgtctggccaagttc
aaggagcgcatccgcgaaaccatgatgggtgaagagctcgagatctaccacaacctggtg
aacgagctgatcgaagaagactctgccgatccgctggagctggctgctgcactggccaag
ctggtacagggcgatcaaccgctgctgctggatgactccattccggatccggtgttcaac
gctggcaacgatcgcggtggcttcgagcgtcgtgagttcaacgaccgtggcggtcgtgac
ttcggtgaccgtggcgatcgtccggcccgtcgcatgccgtccctcgaaccgcgtccgctg
aaagacaacccggacgtggagatggagcgttaccgtgtcgacgtgggcgcccatcacggc
gtcaagccgggccagatcgtgggtgccatcgccaacgaggcgaacatcgagagccgcttc
atcggcaacatcgacatcgccgatgacttctccaccgtcgatctgcccaagggcatgagc
gccgaggtgctggaagtgatcaagaaggcccgtgtctgccagcgtccgctgcagatcacc
cgttacaccgaagtgccggccggcggcaacactgctccccgtccgccccgtggtgatcgt
ccgttccgtggcgaccgtcctttcaacaaggatcgccgtccccagggtgaccgtcccttc
aacaaggatcgccgtgaaggcggtttcgacaagggtcgcaaattcggtggcaacaagcgc
cgcgacagctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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