KEGG   Aciduliprofundum sp. MAR08-339: AciM339_0543
Entry
AciM339_0543      CDS       T02396                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
acf  Aciduliprofundum sp. MAR08-339
Pathway
acf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AciM339_0543
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acf03019]
    AciM339_0543
   03009 Ribosome biogenesis [BR:acf03009]
    AciM339_0543
Enzymes [BR:acf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AciM339_0543
Messenger RNA biogenesis [BR:acf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AciM339_0543
Ribosome biogenesis [BR:acf03009]
 Prokaryotic type
  rRNA helicases
   AciM339_0543
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25 CMS1 Helicase_C_2 Flavi_DEAD AAA_22 Rhodanese Glyoxalase_5 SLFN-g3_helicase
Other DBs
NCBI-ProteinID: AGB04430
UniProt: L0HK59
Position
complement(470758..472110)
AA seq 450 aa
MKFDEMDISIGTKKVLELHGFKEPTEVQESVIGPAIDGMDLIVQSKTGSGKTLAFLIPIF
EKLNRGLEAIVLVPTRELAQQVDRVARILAKGHGKSTVVIYGGVSMENQIRGLKHASVVI
GTPGRVMDLMRRGYLDLSRIKIFVLDEADRMLDMGFIEDIRWILSKAPREKQMMLFSATM
PQEIINLARHYMSNPEKIILSADEITAENVSQFYVEVGEINKIAKLSSLIINEGGKYLVF
CNTKRNTKSVAEILQKYGFRAFALHGDMRQASRSRTMDAFKQGKINILISTDVAARGIDV
HGITHVVNYDVPQYPKDYVHRIGRTGRLDARGKAITFVSREEMEYFRRIEEFIGKKIPRI
EIRQAGRIKERLDYREKSDIFGMVKFKFELKNELSEWELVKIVSNAGIHEESIGSVTIQG
KSGELKVHYRNAPKLRKIRVFRRINLVDAG
NT seq 1353 nt   +upstreamnt  +downstreamnt
atgaaatttgacgagatggatatttccattggaacaaaaaaggtccttgaacttcatggt
tttaaggaaccaacagaggtgcaggagagcgttataggccctgcaattgatggaatggat
ttgattgtgcagtccaagacgggctcggggaagacgcttgcttttctcatacccatattt
gagaagctgaacagggggttggaagcaatagtgcttgttcccaccagggagcttgctcag
caggttgatagggtggcaaggattctggccaagggtcacggaaagagtacggtggttatt
tatgggggagtgagcatggaaaatcagatacggggtctcaagcacgcctccgtggttata
ggtaccccgggaagggtaatggacctcatgcgcagaggttatcttgatctgagcagaata
aagatttttgtgctcgatgaggctgacagaatgctggacatgggattcatagaggacatt
cgctggattttgagtaaggctcccagggagaagcagatgatgctattctccgccaccatg
ccgcaggagatcataaatcttgccagacattatatgagcaatcctgagaagataatttta
tcggccgatgagataactgcggagaacgtatcccagttctacgttgaggtgggagagata
aacaagatagccaaactatcatcgctcataataaatgagggtggaaagtatctagttttc
tgcaacaccaagagaaacacgaagagcgtggcagagatcctgcagaagtacggtttcagg
gcctttgcattgcatggggatatgcgtcaagcgtctcgcagcagaacaatggatgccttc
aagcagggcaagataaacatattgatctccacagacgtggctgccaggggcattgatgtg
catggcataacccatgttgtgaattacgatgtgccccagtatccgaaggattatgtgcat
cgtataggtcgcacggggaggcttgatgcccggggcaaggctataacattcgttagcagg
gaagaaatggagtatttccgaagaatagaggagttcataggcaagaaaataccaaggata
gagataaggcaggctggcaggattaaagagcgtctggattacagggaaaagagcgacata
tttggtatggtcaaattcaaatttgagctgaaaaacgagttgagtgagtgggaacttgtg
aagatagtgagcaacgcgggcattcatgaggagagtataggtagtgtgactattcagggc
aagagtggtgagttgaaggttcactacagaaacgctccaaaattgcgaaaaattcgggtt
tttaggcgcataaatcttgtggatgcagggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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