KEGG   Alcaligenes faecalis ZD02: UZ73_06840
Entry
UZ73_06840        CDS       T04157                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
afa  Alcaligenes faecalis ZD02
Pathway
afa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:afa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    UZ73_06840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:afa03400]
    UZ73_06840
DNA repair and recombination proteins [BR:afa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     UZ73_06840
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      UZ73_06840
SSDB
Motif
Pfam: UvrA_inter ABC_tran AAA_16 AAA_29 nSTAND1 AAA_21 SMC_N UvrA_DNA-bind RsgA_GTPase AAA_25 ATPase Viral_helicase1 AAA_33 AAA_18 NACHT DUF4350 SbcC_Walker_B DnaJ_CXXCXGXG Anti-TRAP
Other DBs
NCBI-ProteinID: ALO37999
Position
1518008..1523710
AA seq 1900 aa
MSSEIRIFGARQNTLKNLNVRIKTGELLVITGVSGSGKSSLAFDTLYAEGQRRYVETFSP
YARQFLDRMDKPQVDRIEGILPAIAIDQVNPVRNSRSTVGTMTELNDYIKLLYARLGELY
CRQCAQPVRRDNADSIAKQIRKLAEDHDDPRLVLTFAVKVPANFTQQEIETLLHQQGYTR
LHHEETQSITPSSSTKKGKSSKAAPTEQKLLYVIQDRFRASTVEPERFMEAIEAALRHGQ
GKLTVYASASADGPETAWRFSQGQHCAQCDIEYSTPVASTFSFNSPLGACESCRGFGRVM
GIDYGLVVPDPSKSLLEGAIRPWQTASYKECQVEMERYAPAAGVRLSVPWKDLSQEERDW
VINGTPDWKGGNQAWKTQWYGAQRFFDWLESRAYKMHVRVLLSKYRSYTTCPACAGSRLK
PEASLWRVGDQAAPADSRYPRFMPVHSNWLREQLDAMPGLSVPDLMRLPIEHVRTFFRGL
HFGDARDAAIDLLLKETLSRLDYLCDVGLSYLSLDRQSRTLSGGEVQRINLTTALGTSLV
NTLFVLDEPSIGLHPRDMHRIIEVMHRLRGNGNTLVVVEHDPQVMVAADRILDMGPGPGE
RGGQILFDGSPQALRGAETLTGRYLSGELSIESPRPMPVAENTPRLLLEDVSAHNLRHIS
VSIPLGRLVCVTGVSGSGKSTLIQDVLYPAILKQQGKPTEAPGPYGALLGAEQIAEVVMV
DQTPIGKTARSNPASYVGAFDPIRKLFAQAPLSKERSYTPGTFSFNSGDGRCPTCGGTGF
EHIEMQFLSDVYLRCPDCDGKRFRPEVLEVRIEHFGRSASIDEVLDMTVHQAMEFFEGLR
DVQTGLAPLADVGLDYLKLGQPVPTLSGGEAQRLKLAAYLAQASRTRLSQVKVAKKGNLF
LFDEPTTGLHFDDIARLMRAFRKLLAAGHSLLIIEHNLDLIRAADWIIDLGPEGGEHGGQ
LLGAGTPGDIMALEQSHTGHALKEYEQAILGKGSALFQEPEMDYQVSSGGSNDGQIAILN
AREHNLKNISVHIPHNTFTVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARAIVQPA
GQPDVDAIYGIPPTVAIEQRTSRGGRKSTVATMTEIHHFLRLLYVKLATQYCPDCHVPVA
PQTAEQIAAQLLRDHKGEHIGLLAPLVTARKGYYTDLAKWAQGKGYTHLRVDGEFIPVNP
WPRLDRYSEHTLELPVADLIIDPRHELQLRQAIREALELGHGSFSVLAPLTPSGSMSLEQ
RRQGQPLSNASQQHFSVKRACPCCGTSFPEPDPRMFSYNSKHGWCKDCFGTGLKLTGFDQ
EQTGEENSWNNGYDGEAVECPSCHGQRLNPVSLAFEWRDQSIAKLAGLPVDEAQTFFGSL
NMSGREADIARDILNEIRSRLDFMHEVGLGYLALDRAAPTLSGGEAQRIRLAAQLGSNLQ
GVCYVLDEPTIGLHPRDNQILLNAMARLEGNGNTLVVVEHDEDTIRRAQHIIDMGPGAGK
RGGEVIAQGTLAEIEANPNSLTGRYLREPLKHPMQARRPVQADAPMLTVHDASLHNLNKV
QAGIPLGKLSLVTGVSGSGKSTFARDVLLDNLQRVVGSKEKPVWQGCSSISGWESLDRVL
EVDQTPIGKTPRSCPATYIGFWDEVRKLFANTNDARLRGWSASRFSFNTGDGRCPLCEGQ
GMRTLEMSFLPDVKVPCDACHGQRFNPETLAVTWRDVSAGQLLQMDVDEAVEYFAAHPKI
LRPLQLMQSVGLGYLTLGQPSPTLSGGEAQRVKLVSELVKARLDEGLTRTGRAYKAPHTL
YVLDEPSVGLSMADVEKLIVVLHRLVDAGHTVLVIEHNLDLIAEADWIVDLGPEGGSGGG
RLVVQGTPDQVQANRASHTGMALAEFLKEHGACMADLKTD
NT seq 5703 nt   +upstreamnt  +downstreamnt
atgagctcagaaattcgcatttttggcgcccgccagaacactctgaaaaacctgaatgta
cgtatcaaaacgggcgagttactggttattaccggcgtttcaggttcaggcaaaagttcg
ctggcctttgacaccctatatgcagaggggcaacggcgctatgtggaaaccttttctccc
tatgcgcgccagttcctggaccgcatggacaagccccaggtcgatcgcattgaaggcatt
ctgcccgccattgccattgaccaggtgaacccggtgcgcaactcgcgcagtaccgtgggc
accatgacggagctgaacgattacatcaagctgctgtacgcccgtctgggcgagctgtat
tgccgccagtgcgcccagcctgtgcgccgcgacaatgccgacagcatcgccaagcagatt
cgcaagctggcagaggaccacgatgacccacgcctggttctgacctttgccgtcaaggtc
ccggccaacttcacgcagcaagaaattgaaaccttgctgcatcagcagggctacacccgc
ctgcaccacgaagaaacacaatccatcacgcccagcagcagcacgaaaaagggcaaaagc
agcaaagccgctcctacagaacaaaagcttctttatgtgattcaggaccgcttccgtgcc
agcaccgtcgagccggaacgtttcatggaagccatcgaagcggccttgcgccacggccag
ggcaagttgacggtgtatgcctcggccagtgccgatggcccggaaaccgcctggcgtttc
agccagggccagcactgtgcccagtgcgatattgaatacagcacgccggttgccagcacc
ttctccttcaactcgcccctgggtgcgtgtgagtcctgccgtggctttggccgcgtgatg
ggcattgattacggtctggtcgttcccgaccccagcaaaagcctgcttgaaggtgcgatc
cgcccttggcagacagccagctacaaagaatgtcaggtcgagatggagcgctacgctccg
gcggccggtgtacgtctgagcgtgccctggaaggacttgagccaggaagagcgcgactgg
gtgattaacggcaccccggactggaaaggcggcaatcaggcctggaaaacccagtggtac
ggcgcacagcgctttttcgactggctggaatcgcgcgcttacaagatgcacgtgcgtgta
ctgctgtccaaataccgcagctacaccacctgcccggcctgcgcaggctctcgtctgaaa
cccgaagccagcctgtggcgcgtgggtgatcaggcagcccccgccgactctcgctatcca
cgcttcatgcccgtgcattccaactggctgcgcgagcaactggatgccatgcccggcctg
agcgtccccgacctgatgcgcctgcctattgagcatgtacgtaccttcttccgtggcctg
cactttggcgacgcgcgcgatgcggccattgacctgctcctgaaagaaaccctgtcccgc
ctggattatctgtgcgatgtgggcctgtcctatttgtccctggaccgccagagccgcacc
ctgtctggcggtgaagtgcaacgtatcaacctgaccacggcactgggcacctcgctggtg
aacaccctgttcgtgctggatgagccctcgattggcctgcacccgcgcgacatgcaccgc
attattgaagtgatgcaccgtctgcgcggtaatggcaacacgctggtcgtggtcgagcac
gacccgcaagtgatggtggccgccgaccggattctggacatgggacccggccctggcgag
cgtggcggtcagattctgtttgatggttcgccccaagccttgcgcggcgcggaaacgctg
acaggccgctacctgagtggcgagctcagcatcgaatcgccccgccctatgccggtggcc
gaaaacacgccccgcctgctgctggaagacgtcagcgcgcacaatctgcgccatatctcc
gtctccattccactgggccgtctggtctgcgtgacgggcgtctccggctcgggtaaatcc
acgctgattcaggacgtgctctacccggccatcctgaaacaacaaggcaaaccaacggaa
gcccctggcccttacggtgccctgctgggtgccgagcagattgccgaagtggtgatggtg
gaccagacgcctatcggcaagacggcccgctccaacccggccagctatgtcggtgccttt
gaccctatccgcaagctcttcgcccaggccccgctgtccaaagaacgcagctacacgccc
ggcaccttcagcttcaatagtggcgatggccgctgtccaacgtgcggcggcacaggcttt
gaacatatcgaaatgcagttcctgtccgatgtgtacctgcgctgtccggattgcgatggc
aagcgcttccgccccgaagtgctggaagtacgtatcgaacactttggtcgcagcgcctcg
attgacgaggtactggacatgaccgtacatcaggccatggagttctttgaaggcctgcgc
gatgtgcaaaccggcctggcgccactggccgatgtgggtctggattacctgaaactgggc
cagcctgtgcccacactctcgggcggtgaggcacagcgcttgaaactggcggcttatctg
gcccaggcctcgcgcacccgtctaagccaggtgaaagttgccaaaaaaggcaatctgttc
ctgtttgacgagcccactaccggcctgcactttgacgatattgcccgcctgatgcgcgcc
ttccgcaagctgctggccgccggtcacagcctgctgattattgagcacaatctggacctg
atccgcgcggcagactggattattgatctgggccctgagggtggcgagcatggcggtcaa
ttgctgggcgcgggtacacctggcgacatcatggcgctggagcaatcgcacactggccat
gcattgaaagagtatgagcaagccattctgggcaagggctcggccctgttccaggagccc
gagatggactaccaggtcagctccggcggcagcaacgatggccagatcgccatcctgaat
gcgcgcgagcacaatctgaaaaacatctcggtgcacatcccgcacaacaccttcacagtc
gtgacgggcgtatccggttcgggcaaatcgaccctggccttcgacattctgtttaacgaa
ggtcagcgccgctacctggagtccctgaacgcctatgcacgtgcgattgtgcagcctgcc
ggtcagcctgatgtagacgcgatctacggtattccacctaccgttgccattgagcagcgc
accagccgcgggggtcgcaagtccaccgtagccaccatgacggaaatccaccacttcctg
cgcttgctgtatgtgaaactggctacccaatactgcccggactgccatgtgcctgtggcc
ccgcagaccgccgagcaaatcgccgcacaactgctgcgtgatcacaagggtgagcatatt
ggtttgctggctccgctggtcaccgctcgcaagggttactacaccgacctggccaaatgg
gcgcagggcaagggctacacccatttgcgtgtggatggcgagttcatccccgtcaaccct
tggccccgtctggaccgttacagcgaacacacgctggaactgccagtggccgacctgatt
attgatccacgccacgaactgcaactgcgccaagccatacgcgaagcgctggaactgggt
cacggctccttcagtgtgctggctcccctgacgccatcgggttccatgtcgctggaacaa
cgccgacaaggtcaaccgctgtccaatgccagccagcaacatttctccgtcaaacgggcc
tgcccctgctgcggcaccagctttcccgagccggacccacgcatgttctcctacaactcc
aagcacggctggtgcaaggactgctttggtacgggcttgaagctgaccggcttcgaccaa
gaacaaacgggcgaggaaaacagctggaacaacggctacgacggcgaagccgtggaatgc
ccaagctgccacggccagcgcttgaacccggtctctctggcatttgaatggcgcgaccaa
tccattgccaagctggccggtttgcccgtggacgaagcacagaccttttttggcagcctg
aacatgagtggccgcgaagccgatattgcgcgcgacattctgaacgagatacgcagccgt
ctggacttcatgcacgaagtgggcctggggtatctggcactggatcgtgctgcccccacc
ttgtccggtggcgaggcccagcgtatccgtctggccgcccagttgggctcgaacctgcag
ggtgtctgctacgtgctggacgaacccaccattggcctgcacccgcgtgacaaccagatt
ctgctgaacgccatggcgcgcctggaaggcaatggcaatacgctggtggttgtcgaacac
gatgaagacaccatacgccgtgcccagcacattattgatatgggccccggtgccggtaaa
cgcggcggtgaagtcatcgcccagggcacactggcagaaatcgaggccaaccccaattcc
ctgactggccgctatctgcgcgagccgcttaaacaccccatgcaggcacgccgtccggtc
caggccgatgcgcccatgctgacggtgcacgatgccagcttgcataacctgaacaaggtc
caggccggtattccgctgggcaagctcagtctggtgacaggcgtgtcgggttccggtaaa
tccacctttgcccgcgatgtgctgctggataatttgcagcgcgttgtcggcagcaaagaa
aaaccggtgtggcagggttgttccagcatcagcggctgggaaagcctggaccgcgtgctg
gaagtggaccagactccgattggcaaaaccccccgctcctgcccggccacctatatcggc
ttctgggacgaggtacgcaaactgtttgccaacaccaacgatgcgcgcctgcgcggctgg
agcgcctcacgcttctccttcaacaccggcgatggtcgctgccccttgtgcgaaggccag
ggcatgcgcaccctggaaatgagcttcctgccagacgtgaaagtgccttgtgacgcctgc
cacggccagcgcttcaatcccgaaacactggcggtgacctggcgcgacgtctccgccggt
cagcttttgcaaatggatgtggatgaggcggttgaatactttgccgcacatcctaaaata
ttgcgccccctgcagctgatgcaaagcgtgggcctgggctatctgaccttgggtcagccc
tcccccaccctgtccggtggcgaggcgcagcgcgtcaagctggtcagcgaactggtcaag
gcccgtctggacgaaggtctgactcgcacaggccgcgcctacaaggctccgcacacccta
tacgtgctggatgagcctagcgtgggcctgtccatggcggatgtggaaaagctgattgtg
gtgctgcaccgactggttgatgccggtcataccgtgctggtgattgaacataatctggat
ttgattgccgaagcagactggattgtcgatctgggccccgaaggcggctcgggcggcggc
aggctggtggtgcagggcacgccggatcaggtacaagccaaccgtgcctcgcataccggc
atggccctggcggaatttttaaaggaacacggcgcatgtatggccgatttgaagacagac
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (19)   
   Pfam (19)   
All databases (52)   

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