KEGG   Burkholderia cenocepacia DDS 22E-1: DM39_1093Help
Entry
DM39_1093         CDS       T03308                                 

Gene name
recD
Definition
(GenBank) exodeoxyribonuclease V, alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
bcen  Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bcen00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    DM39_1093 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bcen03400]
    DM39_1093 (recD)
Enzymes [BR:bcen01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     DM39_1093 (recD)
DNA repair and recombination proteins [BR:bcen03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     DM39_1093 (recD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: AAA_30 AAA_19 UvrD_C_2 AAA_11 Viral_helicase1 Helicase_RecD SH3_13 UvrD-helicase DUF2075 MukB AAA_22 Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID: AIO32312
UniProt: A0A088U736
Position
1:1179417..1181696
Genome map
AA seq 759 aa AA seqDB search
MNASDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAAAARWAARAAFAT
SRATAGGHVCVSLGALAQRYEAPLDDVRAALAASGVVAFGTLARGDERPLIVDRHDHLYL
SRYFDYERRLADALVAQAGVAMPDDALSPERLRASLARYFGPATAEVDWQRVAAIVALTG
RVTIVSGGPGTGKTTTVVGVLACLLDAQPALRIALAAPTGKAAQRMQEALHARAGELPPE
LAARLPDTSYTLHRLLGGGGATGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPG
ARLVLLGDKDQLAAVEAGAVFAELSARPTFTAAARARIAQALGIDEAAFVAALPVPDDSA
AAAVSKPASVSASISTSATAPVSTRRPARRAAVDTRQASLFDDEPQDDAPALAGVAAAHS
DEASTALDAGDAPAWIEADELAWLDAAVLPPFDAGAAALASAAPPPTPPSGDAAPAPTSP
APLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPADDAAAASFHDDAGETLA
AATVERLARRFGAYLDALRDALAAPTPDPLPLFDALNRFRILCATRNGARGAEHVNALVA
AHVRRAARVPLAVGAHWFTGRPIMVTRNDYALGLFNGDIGIALPDAHGVLRVWFRRADGT
ARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTRELVYTAVTRARTRVQ
VIGPRRVLAQAVSTRTQRDSGLSARVDEALARRRAEAAR
NT seq 2280 nt NT seq  +upstreamnt  +downstreamnt
atgaacgcgtcggacgatacgctcgaattcaccggcggcctcgttgcgcggctgccggag
ccggcggatttcggcatcgcgctcgcggaagggtttgcgcgccgcatcggcgatctcgcg
cgacgtgcgggtgcgccggctgcggcggcgcgctgggccgcgcgcgcggcgttcgcgacg
agccgcgcgacggccggcggccacgtgtgcgtgtcgctcggcgcgctcgcgcagcgctac
gaggcgccgctcgacgacgtgcgcgcggcgcttgccgcgagcggcgtcgtcgcgttcggc
acgctcgcgcgcggcgacgaacggccgctgatcgtcgaccggcacgaccatctgtacctg
tcgcgctatttcgactacgagcggcggctggccgacgcgctcgtcgcgcaggccggcgtc
gcgatgcccgacgacgcgctgtcgcccgagcggctgcgcgcgagcctcgcccgctatttc
gggccggcgacggcggaggtcgactggcagcgcgtcgcggcgatcgtcgcgctgacgggc
cgcgtgacgatcgtcagcggcggccccggcaccggcaagacgacgaccgtcgtcggcgtg
ctggcctgtctgctcgacgcgcagccggcgctgcgcatcgcgctggcggcgccgaccggc
aaggccgcgcagcggatgcaggaagcgctgcacgcgcgcgccggcgagctgccgcccgaa
ctggcggcgcgcctgcccgacacgtcgtacacgctgcaccggctgctcggcggcggcggc
gcgacgggtttccgccatcatcgcgacaatccgctgccgtacgacctgatcgtcgtcgac
gaagcgtcgatgatcgacgtcgcgctggccgcgcacctgctcgatgcgctcgcgccgggc
gcgcggctcgtgctgctcggcgacaaggaccagctcgccgcggtcgaggcaggcgccgtg
ttcgccgagctgagcgcgcggccgacctttaccgctgcggcgcgtgcgcgcatcgcgcag
gcgctcggcatcgacgaggcggcgttcgtcgcggcgctgccggtgccggatgacagcgcg
gcggcagcggtgtcgaaaccggcttcggtttcggcttcgatttcgacttcggcgacagcg
ccggtatccacgcgcagacccgcacgccgcgccgcagtcgatacgcggcaggcgtcgctt
ttcgacgacgaaccgcaggacgatgcgcccgcgctggccggcgtggccgcggcgcattcg
gacgaagcaagcaccgcgctcgatgctggcgacgcgcccgcgtggatcgaggccgacgaa
ctcgcgtggctggacgccgcggtgctgccgccgttcgacgccggcgccgccgcgctggct
tccgctgcgccgccgccgacgccaccgtccggcgacgccgcacccgcgccgacctcgccc
gcgccgctcgcggactgtgtcgtgtggctcgagcgcaactaccgcttcggcctcgattcg
ccgatcggccggctgtcgctcgcgatccgccgcggcgacgtgcaggccgcactcgacgcg
ctgccggcggacgacgcggccgccgcatcgtttcacgacgacgcgggcgagacgcttgcg
gccgcgaccgtcgagcggctcgcgcggcgcttcggcgcgtatctcgacgcattgcgcgat
gcgctggccgcgccgacgcccgatccgctgccgctgttcgatgcgctcaatcgcttccgg
atcctctgcgcgacccgcaacggcgcgcgcggcgccgagcacgtcaacgcgctggtggcc
gcgcacgtgcggcgcgcggcgcgcgtgccgctcgcggtcggcgcgcactggttcaccggg
cggccgatcatggtcacgcgcaacgactatgcgctcggcctgttcaacggcgatatcggc
atcgcgctgcccgacgcgcacggcgtattgcgcgtctggttcaggcgcgcggacggcacc
gcgcgcgcggtgtcgccggccgcgctgccgccgcacgaaaccgcgttcgcgctgacggtc
cacaagtcgcagggctcggagttcgacgaggccgcgctggtgctgccggcgagcttcggc
cgcgtgctgacgcgcgagctcgtctatacggctgtcacgcgcgcgcgcacgcgcgtgcag
gtgatcggcccgcgccgtgtgctcgcgcaggcggtctcgacgcgcacgcagcgcgattcg
gggctgtcggcgcgcgtcgacgaggcgctcgcgcggcgccgcgcggaggccgcacgatga

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