KEGG   Burkholderia cenocepacia DDS 22E-1: DM39_1093
Entry
DM39_1093         CDS       T03308                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
bcen  Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bcen00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    DM39_1093 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bcen03400]
    DM39_1093 (recD)
Enzymes [BR:bcen01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     DM39_1093 (recD)
DNA repair and recombination proteins [BR:bcen03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     DM39_1093 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 AAA_11 Viral_helicase1 UvrD-helicase SH3_13 Helicase_RecD SLFN-g3_helicase AAA_22 DEAD MukB RecD_N Flavi_DEAD ATPase
Other DBs
NCBI-ProteinID: AIO32312
UniProt: A0A088U736
Position
1:1179417..1181696
AA seq 759 aa
MNASDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAAAARWAARAAFAT
SRATAGGHVCVSLGALAQRYEAPLDDVRAALAASGVVAFGTLARGDERPLIVDRHDHLYL
SRYFDYERRLADALVAQAGVAMPDDALSPERLRASLARYFGPATAEVDWQRVAAIVALTG
RVTIVSGGPGTGKTTTVVGVLACLLDAQPALRIALAAPTGKAAQRMQEALHARAGELPPE
LAARLPDTSYTLHRLLGGGGATGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPG
ARLVLLGDKDQLAAVEAGAVFAELSARPTFTAAARARIAQALGIDEAAFVAALPVPDDSA
AAAVSKPASVSASISTSATAPVSTRRPARRAAVDTRQASLFDDEPQDDAPALAGVAAAHS
DEASTALDAGDAPAWIEADELAWLDAAVLPPFDAGAAALASAAPPPTPPSGDAAPAPTSP
APLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPADDAAAASFHDDAGETLA
AATVERLARRFGAYLDALRDALAAPTPDPLPLFDALNRFRILCATRNGARGAEHVNALVA
AHVRRAARVPLAVGAHWFTGRPIMVTRNDYALGLFNGDIGIALPDAHGVLRVWFRRADGT
ARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTRELVYTAVTRARTRVQ
VIGPRRVLAQAVSTRTQRDSGLSARVDEALARRRAEAAR
NT seq 2280 nt   +upstreamnt  +downstreamnt
atgaacgcgtcggacgatacgctcgaattcaccggcggcctcgttgcgcggctgccggag
ccggcggatttcggcatcgcgctcgcggaagggtttgcgcgccgcatcggcgatctcgcg
cgacgtgcgggtgcgccggctgcggcggcgcgctgggccgcgcgcgcggcgttcgcgacg
agccgcgcgacggccggcggccacgtgtgcgtgtcgctcggcgcgctcgcgcagcgctac
gaggcgccgctcgacgacgtgcgcgcggcgcttgccgcgagcggcgtcgtcgcgttcggc
acgctcgcgcgcggcgacgaacggccgctgatcgtcgaccggcacgaccatctgtacctg
tcgcgctatttcgactacgagcggcggctggccgacgcgctcgtcgcgcaggccggcgtc
gcgatgcccgacgacgcgctgtcgcccgagcggctgcgcgcgagcctcgcccgctatttc
gggccggcgacggcggaggtcgactggcagcgcgtcgcggcgatcgtcgcgctgacgggc
cgcgtgacgatcgtcagcggcggccccggcaccggcaagacgacgaccgtcgtcggcgtg
ctggcctgtctgctcgacgcgcagccggcgctgcgcatcgcgctggcggcgccgaccggc
aaggccgcgcagcggatgcaggaagcgctgcacgcgcgcgccggcgagctgccgcccgaa
ctggcggcgcgcctgcccgacacgtcgtacacgctgcaccggctgctcggcggcggcggc
gcgacgggtttccgccatcatcgcgacaatccgctgccgtacgacctgatcgtcgtcgac
gaagcgtcgatgatcgacgtcgcgctggccgcgcacctgctcgatgcgctcgcgccgggc
gcgcggctcgtgctgctcggcgacaaggaccagctcgccgcggtcgaggcaggcgccgtg
ttcgccgagctgagcgcgcggccgacctttaccgctgcggcgcgtgcgcgcatcgcgcag
gcgctcggcatcgacgaggcggcgttcgtcgcggcgctgccggtgccggatgacagcgcg
gcggcagcggtgtcgaaaccggcttcggtttcggcttcgatttcgacttcggcgacagcg
ccggtatccacgcgcagacccgcacgccgcgccgcagtcgatacgcggcaggcgtcgctt
ttcgacgacgaaccgcaggacgatgcgcccgcgctggccggcgtggccgcggcgcattcg
gacgaagcaagcaccgcgctcgatgctggcgacgcgcccgcgtggatcgaggccgacgaa
ctcgcgtggctggacgccgcggtgctgccgccgttcgacgccggcgccgccgcgctggct
tccgctgcgccgccgccgacgccaccgtccggcgacgccgcacccgcgccgacctcgccc
gcgccgctcgcggactgtgtcgtgtggctcgagcgcaactaccgcttcggcctcgattcg
ccgatcggccggctgtcgctcgcgatccgccgcggcgacgtgcaggccgcactcgacgcg
ctgccggcggacgacgcggccgccgcatcgtttcacgacgacgcgggcgagacgcttgcg
gccgcgaccgtcgagcggctcgcgcggcgcttcggcgcgtatctcgacgcattgcgcgat
gcgctggccgcgccgacgcccgatccgctgccgctgttcgatgcgctcaatcgcttccgg
atcctctgcgcgacccgcaacggcgcgcgcggcgccgagcacgtcaacgcgctggtggcc
gcgcacgtgcggcgcgcggcgcgcgtgccgctcgcggtcggcgcgcactggttcaccggg
cggccgatcatggtcacgcgcaacgactatgcgctcggcctgttcaacggcgatatcggc
atcgcgctgcccgacgcgcacggcgtattgcgcgtctggttcaggcgcgcggacggcacc
gcgcgcgcggtgtcgccggccgcgctgccgccgcacgaaaccgcgttcgcgctgacggtc
cacaagtcgcagggctcggagttcgacgaggccgcgctggtgctgccggcgagcttcggc
cgcgtgctgacgcgcgagctcgtctatacggctgtcacgcgcgcgcgcacgcgcgtgcag
gtgatcggcccgcgccgtgtgctcgcgcaggcggtctcgacgcgcacgcagcgcgattcg
gggctgtcggcgcgcgtcgacgaggcgctcgcgcggcgccgcgcggaggccgcacgatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (25)   

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