KEGG   Bacteroides fragilis NCTC 9343: BF9343_1587
Entry
BF9343_1587       CDS       T00239                                 
Name
(GenBank) putative ATP-dependent RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
bfs  Bacteroides fragilis NCTC 9343
Pathway
bfs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bfs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BF9343_1587
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bfs03019]
    BF9343_1587
Enzymes [BR:bfs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BF9343_1587
Messenger RNA biogenesis [BR:bfs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BF9343_1587
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 CMS1 Phage_integrase AAA_19 ERCC3_RAD25_C CheB_methylest
Other DBs
NCBI-ProteinID: CAH07368
UniProt: Q5LET2
Position
complement(1940577..1941860)
AA seq 427 aa
MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL
QKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRS
GIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQTL
FFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKDTS
IESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATDI
AARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQKLI
GKNIPVVKDHPFVTTEGIKAQEEKQEEIKVKAKANKTYRGSRANGDFWRRKKQKTNQPSS
TKQEKRK
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgacatttgaaaatttgaatttgatagagcctatcttaaaggctttaagacaagagggt
tacacctctcccaccccaatacaagaacagtcaatccccattttacttcaaggaaaagat
ttattaggttgtgctcaaacaggtaccggtaaaacagctgctttttctatccctatcttg
caaaaattgtataaaaccgaccatcgtaaaggtatcaaggcacttgtgctgacgccaacc
cgggaacttgcaattcagataggtgaaagtttcgaagcatacggacggtataccggtctg
aaacatgccgtaatctttggaggagtaggacagaaaccacagactgacgctctacggagc
ggtattcagatactggttgccactcctggcagattattggatttgatatcacagggattt
atctccctgagttcacttgatttttttgtattggacgaagcagaccgtatgctggacatg
ggatttatccatgacatcaaacgcatcctgaaactgctaccggcccgaagacaaactttg
tttttttcggcgaccatgccaccggaaatagaaacgttggcaaattcgatgttgactaaa
ccggagaaagtggaagtgaccccggcctcttcgactgtggacatcatctcacagcaggtc
tatttcgtcgagaaaaaagaaaaaaaggacttgctgatccatctgttgaaagatacatca
atcgagtcggtacttatctttacgcgtacaaaatacggagccgacaaattggcacgtgta
ctgactaaagccggtatcggagctgaagcgatacatggtaacaaaactcaaaatgcacgc
cagcgtgctttgaccaattttaagaaccatacccttcgcgccttgatagcaaccgacatt
gctgcacgcggcatcgatgtagaccaattatcacacgtaatcaattacgagttgcccaat
gttccggaaacttacgtgcaccgcatcggtcgtaccggacgtgccggacatgaaggagtg
gccatctctttctgcgaatcagaagaactgccctacttaaaagatatccaaaagttgata
gggaaaaacatcccggtggtaaaagaccacccgtttgtcacgaccgaaggtatcaaggcc
caggaagaaaagcaggaagaaatcaaggttaaagccaaagccaacaaaacataccgcggg
agccgggctaatggcgacttctggagacggaaaaagcaaaaaacaaatcaaccgtcttcc
accaaacaggaaaaaaggaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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