KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110169201
Entry
110169201         CDS       T05002                                 
Symbol
vps4a
Name
(RefSeq) vacuolar protein sorting-associated protein 4A isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03250  Viral life cycle - HIV-1
bpec04144  Endocytosis
bpec04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    110169201 (vps4a)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    110169201 (vps4a)
  09143 Cell growth and death
   04217 Necroptosis
    110169201 (vps4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:bpec04131]
    110169201 (vps4a)
   03400 DNA repair and recombination proteins [BR:bpec03400]
    110169201 (vps4a)
Membrane trafficking [BR:bpec04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    110169201 (vps4a)
DNA repair and recombination proteins [BR:bpec03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    110169201 (vps4a)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_22 AAA_14 AAA_5 IstB_IS21 AAA_25 RuvB_N AAA_18 DUF815 AAA_17 AAA_2 AAA_33 RNA_helicase nSTAND3 PhoH AAA_24 ResIII AAA_28 AAA_7 Mg_chelatase Parvo_NS1 NACHT YhdB bpMoxR Viral_helicase1 AAA_30 DUF5906
Other DBs
NCBI-GeneID: 110169201
NCBI-ProteinID: XP_020790379
Position
Unknown
AA seq 436 aa
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHSVEYFLHAIKYEAHSDKAKESIRAKC
MQYLDRAEKLKDYLKNKDKQGKKPVKEAQSNDKSDSDSEGENPEKKKLQEQLMGAIVMEK
PNVRWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA
TEANNSTFFSVSSSDLMSKWLGESEKLVKNLFDLARQHKPSIIFIDEVDSLCGSRNENES
EAARRIKTEFLVQMQGVGNNNDGILVLGATNIPWVLDAAIRRRFEKRIYIPLPEEPARAH
MFRLHLGNTPHSLSDADLRQLAHKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVCGP
SRSNNQVMVDDLLTPCSPGDPAAIEMTWMDVPSDKLLEPIVCMSDMLRSLSTTRPTVNTE
DLLKVKKFTEDFGMEG
NT seq 1311 nt   +upstreamnt  +downstreamnt
atgacaacgtcaacattacagaaagcaattgatctcgtaaccaaagcgactgaggaggac
aaagcaaagaactatgaggaggccctgcgtttgtaccagcactctgtggagtacttccta
catgccatcaaatatgaggcccacagtgacaaggcaaaagaaagcatccgggccaagtgt
atgcagtacctggaccgagctgaaaaactcaaagactacctgaagaacaaagataaacaa
ggcaagaaaccagtgaaggaagcgcagagcaatgacaagagcgacagtgacagtgaagga
gaaaacccagagaagaaaaagctccaggagcagttaatgggtgctattgtcatggagaag
cccaatgtgcggtggagtgatgtggccgggctggagggagctaaagaagctttgaaggag
gctgttatcctgcccattaaattcccacatctgttcacagggaagcggactccatggagg
ggcatcctactctttggacccccagggacaggaaagtcctaccttgccaaggcagtggcc
actgaagccaacaactccaccttcttctcagtgtcctcttcagatctgatgtctaagtgg
ctgggagagagtgaaaaactggtgaagaatctgtttgacttggcacggcagcacaagcct
tccatcatcttcattgacgaggtggactcactgtgcggctccagaaacgagaacgagagt
gaggcggcgcgacgcatcaagactgagtttctggtgcaaatgcagggtgtgggcaacaat
aatgatggcatcctggtgctgggagccaccaacatcccctgggtcctggacgcagccata
cgcagaagatttgagaaaaggatctacatcccgctgccagaggagccggcacgagcacac
atgttccggctgcacctggggaacacgcctcatagcctgagtgatgcagatctgaggcag
ctcgcccacaagaccgatggctactcaggggctgacatcagcatcatcgtacgggatgct
ctcatgcagcctgtgcgcaaagtgcagtctgccacacacttcaagaaggtgtgtggtcct
tcccgaagtaacaaccaggtcatggtggatgacctcttgaccccttgctcccctggtgac
cctgctgccatagagatgacctggatggatgtgcctagtgataagcttctggagcctata
gtgtgcatgtcggacatgctgcgctctctgtccaccactcggcccacagtcaacactgaa
gacctgctcaaagtcaagaagttcactgaggactttggcatggagggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (32)   
   Pfam (32)   
All databases (52)   

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