KEGG   Paraburkholderia phymatum: Bphy_1747
Entry
Bphy_1747         CDS       T00704                                 
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
bph  Paraburkholderia phymatum
Pathway
bph03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Bphy_1747
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bph03400]
    Bphy_1747
Enzymes [BR:bph01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Bphy_1747
DNA repair and recombination proteins [BR:bph03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Bphy_1747
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 AAA_11 Viral_helicase1 UvrD-helicase SH3_13 Helicase_RecD SLFN-g3_helicase AAA_22 DEAD RecD_N CbiA AAA_25 UvrD_C T2SSE MukB
Other DBs
NCBI-ProteinID: ACC70929
UniProt: B2JKV2
Position
1:complement(1989853..1991871)
AA seq 672 aa
MSTFDQPLPDVKVNVPAPADFSTALAEGFARRVSALALRGGASEDAVRWAARAAFSASRA
TSEGHVCTSLDELAQRYEAEVAHVRCALLASGVASDGMQPAYALRPLVVDGQGRLYLARY
YDYERRLAQSLVDHARVEHEDGVSGEMSPHALRERLLRYFGPPQDEQIDWQRVAAVMALS
GRLTIVSGGPGTGKTTTVVGVLACLLDARPALRVALAAPTGKAAQRMQEALLARAGSLPP
ELAARLPHTSFTLHRLLGTGPDGRFRHHRENPLPYDVIVIDEASMIDVAMATHLFDALAR
DTHLVMLGDKDQLAAVEAGAVFGELSAQPAFTAQGVGSIAAALGIGERSLRDALPATAIC
HDARSDQAEPLFDDLFAMSSGAPSEAKPARLAPLADCVVWLERNYRFGLESAIGRLSLAI
RRGAAQEALDVMDIDPAVPCAAAFHEDMDAAPSEHTIHRLAAGFAAYADALTAALFSTSA
NAASHAPALFDALNRFRILCATRLGARGVDHMNAAMAAQVRRAARMPLAIGAQWFAGRPI
MVTRNDYALGLFNGDIGIALPGADGALRVFFRGADGALRAVSPAALPPHDTAFALTVHKS
QGSEFDHAVLMLPSTFSRVLSRELVYTAVTRARERVEVVGSRAVLMRAIATPTQRDSGLA
ARIAEAMEAGGR
NT seq 2019 nt   +upstreamnt  +downstreamnt
gtgagcacattcgatcagccgttgcccgacgtcaaggtcaatgttcccgcgcctgcggac
ttcagcacggcgctcgcggaaggtttcgcgcggcgggtgagtgcactcgcgctgcgcggc
ggtgcgtccgaagacgccgtgcgctgggccgcgcgggccgcgttcagtgcgagtcgcgcg
acatcggaaggacatgtgtgcacgtcgctggacgaactcgcgcaacgttacgaggccgag
gtcgcgcatgtgcgctgcgcgctgctcgcaagcggcgtcgcaagcgatggcatgcagccg
gcctatgcgctgcgaccgctcgtcgtcgacgggcaggggcgactctatctcgcgcggtac
tacgactacgagcgccggctcgcgcagtcactcgtcgatcacgcacgcgtcgagcatgag
gatggcgtgtccggcgagatgtcgccgcatgctttgcgcgaaagactgctgcgctatttc
ggtccgccgcaggacgagcagatcgactggcagcgcgtagccgccgtgatggcgctgtcg
gggcggctgacgatcgtcagcggcggtccgggcacgggcaagacgacgacggtggtgggc
gtgctcgcgtgcctgctggacgcgcgccccgctctgcgtgtcgcgcttgccgcgccgaca
ggcaaggctgcgcagcgaatgcaggaggcgctgctcgcgcgcgccggatcgttgccgccc
gaactcgccgcgcgtctgccgcacacctcgttcaccctgcaccggctgctgggtacgggg
ccggacgggcgtttccggcaccatcgcgagaatccgctgccctacgacgtgatcgtgatc
gacgaggcgtcgatgatcgacgttgcgatggcgacgcatctgttcgatgcgctcgcacgc
gacacgcatctcgtgatgctcggcgacaaggatcagctcgccgccgtcgaagcgggtgcg
gtattcggcgagttgagcgcgcagcctgctttcacggcacagggcgtcggttcgatcgcg
gccgcgctgggtatcggcgaacgctcgctgcgcgatgcactgcccgccaccgccatctgt
cacgatgcgcgttcagaccaggctgaacctttgttcgacgatctgttcgccatgtcctcc
ggcgcgccgtctgaagcgaaaccggcgcggctcgcgccgcttgcggattgcgttgtatgg
ctggagcgcaattaccgcttcggactggaatcggcgatcggccgtttgtcgcttgccatt
cggcgcggcgcagcacaggaagcgctcgacgtgatggacatcgatcccgccgtcccctgc
gcggccgcgtttcatgaagacatggacgctgccccttccgagcacacgatccaccgcctc
gccgctggcttcgctgcgtatgcggatgcgctgaccgccgcgctcttcagcacatcggca
aacgcggcgtcgcacgcgcccgcgctcttcgacgcgctcaatcgcttccgcatcctgtgt
gcgacgcgtctcggcgcacgcggcgtcgatcacatgaacgcggcgatggccgcgcaggtg
cgccgtgccgcgcgcatgccgctcgcgatcggtgcgcaatggttcgccggccgcccaatc
atggtgacgcgcaacgactatgcgctggggctgttcaatggcgatatcggcatcgcgctg
ccgggcgcggacggcgcgttgcgcgtcttcttccgcggcgcggacggcgctctgcgcgcc
gtgtcacccgccgcgctcccgccgcacgatactgcgttcgcgctcaccgtccacaagtcg
cagggctcggagttcgatcatgccgtgctgatgctgccgtccacattcagccgtgtgctg
tcgcgcgagctggtctatacggccgtgacgcgggcgcgcgagcgggtcgaagtggtcggc
tcgcgcgctgtgctgatgcgcgcgatcgcgacgccgacccagcgcgattcgggactggct
gcgcggatcgccgaggcgatggaagcgggtgggcgttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (17)   
   Pfam (17)   
All databases (27)   

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