KEGG   Burkholderia pseudomallei NAU35A-3: BBU_1456
Entry
BBU_1456          CDS       T03476                                 
Name
(GenBank) hypothetical protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
bpsa  Burkholderia pseudomallei NAU35A-3
Pathway
bpsa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBU_1456
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpsa03019]
    BBU_1456
Enzymes [BR:bpsa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BBU_1456
Messenger RNA biogenesis [BR:bpsa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BBU_1456
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Ric8 DegT_DnrJ_EryC1 P-loop_SecA CMS1 Sacchrp_dh_NADP CARD_2
Other DBs
NCBI-ProteinID: AIS88963
Position
1:1760472..1761935
AA seq 487 aa
MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA
KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRD
IERLIKREIPQQVIPGFEPDPNAKPEPIQRRGQRGAVAGNGGSGNGNGNSGGAGNGGRGN
RAPRAASQPQAQQGQAAARRDGGTQAKAAKPQQARGGNSRPAGNGNSNGGGAHANRSRSS
RSGQRGR
NT seq 1464 nt   +upstreamnt  +downstreamnt
atgtcttttgcatctctcggtctcgccgaaccgctcgtgcgggccgtcaacgagctgggc
tacacgcagcccacgccgatccaggctcaggccattcccgccgtgctgggcggcggcgat
cttctcgccggcgcccagacgggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcacgcgttctacgcggagaaccgcagcgcgcgccgcgcggtgcgcgcgctc
atcctcacgccgacgcgcgagctcgccgcgcaggtcgaggaaagcgtgcgcgcgtacagc
aaatacgtgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gacgcgttgaagcgcggcgtcgacatcgtcgtcgcgacgccggggcgcctgctcgaccac
atgcagcagaagacgatcgacgtgtcgagcctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccggcg
aagcgccagaacctgctgttctcggcgaccttctccgacgagatcaagtcgctcgcggac
agcctgctcgattcgcccgcgctgatcgaggtcgcgcgccgcaataccacggccgagacg
atcgcgcagaagatccacccggtcgatcgcgatcgcaagcgcgagctgctcacgcatctg
atccgcgagcacaactggtttcaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggcttgccgagcaactgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcgcgcacgcgcgcgctgtccgaattcaagagcagcacgctgcaggtgctc
gtcgcgaccgacatcgccgcgcgcgggatcgacatcgatcagttgccgcacgtcgtcaac
ttcgatctgccgaacgttcccgaggactacgtgcaccggatcggccgcaccggccgcgcg
ggcgcgaacggcgaggcggtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctcatcaagcgcgagattccgcagcaggtgattccgggcttcgagccggac
ccgaacgcgaagccggagccgatccagcggcgcgggcagcgcggcgccgtcgccggaaac
ggcgggagcggcaacggcaacggcaacagcggcggcgcgggcaacggcggccgcggcaat
cgcgcgccgcgcgcggcaagccagccgcaagcgcagcaaggccaagccgccgcgcggcgc
gacggcggcacgcaagcgaaggccgccaagccgcaacaggcgcgcggcggcaacagccgc
ccggcgggcaacggcaattcgaacggcggcggcgcgcatgcgaatcgcagccgttcgtcg
cgcagcggccagcgcggccgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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