KEGG   Beta vulgaris (sugar beet): 104897021
Entry
104897021         CDS       T03548                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
bvg  Beta vulgaris (sugar beet)
Pathway
bvg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bvg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104897021
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bvg03019]
    104897021
   03041 Spliceosome [BR:bvg03041]
    104897021
   03009 Ribosome biogenesis [BR:bvg03009]
    104897021
   03016 Transfer RNA biogenesis [BR:bvg03016]
    104897021
Enzymes [BR:bvg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     104897021
Messenger RNA biogenesis [BR:bvg03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     104897021
Spliceosome [BR:bvg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    104897021
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    104897021
Ribosome biogenesis [BR:bvg03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    104897021
Transfer RNA biogenesis [BR:bvg03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    104897021
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk Helicase_C ATPase_2 nSTAND3 DUF4047
Other DBs
NCBI-GeneID: 104897021
NCBI-ProteinID: XP_010682135
Position
6:complement(43542360..43560451)
AA seq 996 aa
MTSIKRKSIEEENPTMESNPPPQKLLKEDNNNNNNNNNDTVACFHDVSYPDNYVPRSSTT
NSSSTSAPAKEFPFTLDPFQAEAIKCLEHGESVMVSAHTSAGKTVVASYAIAMSLRNKQR
VIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYRGSEITR
EVAWAIFDEVHYMRDKERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPC
HIVYTDYRPTPLQHYIFPSGGKGLYLVVDENAKFREDSFQKALSALAPAAEGEKKRENGK
WQKGVVVGKMGEESDIFKLVKMLIQRQYEPIILFSFSKRECELLAMQMAKMDLNGDDEKV
NIETIFWSAMDMLSDDDKKLPQVTNLLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKC
LFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILM
VDEKLEPSTAKMMLKGSADSLNSAFHLSYNMLLNQLRCEDGNPENLLRNSFYQYQADRAI
PDLERQAKQLKEERNSIIIEKEESLKNYYSLIEQYKSLKEDVREIVFSPKYCLPFLQPGR
LVCIECSKTDEDLPSFSIEDNVSWGVIINFQRTKRVSEESKRPEDASYTLDVLARCMVSR
EGEGKRTTRIVPLKDPGEPIVVSVPLSQIYSLSTIRVIMSKDLLPLEARQNTLKKVSEVF
TRFSKEGIPLLDPEDDMKVQSSSYRKAVRRIEALESLFDKHEVAKSPLIKEKLKILHKKQ
ELGAKIKSIKKQMHASTALAFKDELKARKRVLRRLSYVTNDDVVELKGKVASEISSADEL
TLTELIFNGVFKDIKVEDMVALLSCFVWQEKLQDAQKPREELELLFVQLQDTARRVAKVQ
LECKVQIDVDNFVNSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEILQQ
LILAAKSIGETELESKFEDAVSTIKRDIVFAASLYL
NT seq 2991 nt   +upstreamnt  +downstreamnt
atgacttctataaagaggaaatcaatagaagaagaaaatccaacaatggagtccaaccca
ccaccccaaaaattgctgaaagaggacaacaataacaacaacaacaacaacaacgacact
gttgcctgttttcatgacgtatcttaccctgataattatgtccctcgttcttcaaccacc
aactcaagctctacttctgcacctgctaaggaattccccttcactctcgacccttttcaa
gctgaagctattaagtgtctcgaacatggcgagtctgttatggtgtcagcccatacctca
gctggaaaaacagttgtagcttcatatgctattgctatgtcattgcgcaataagcaaaga
gtgatatatacttcccctatcaaggctcttagcaaccagaaatatcgagaatttaaagaa
gagttttcagacgttggattgatgacaggggatgtcaccattgatcctaatgcttcatgc
ttggtgatgacaacagaaatctggcgaagtatgcaatatagaggatcagaaattacaaga
gaggtggcatgggcaatatttgatgaggttcactatatgcgtgataaggagcggggtgtg
gtatgggaagaaagcatagtgatggctccaaaaaattctcgatttgtgttcctttcagca
acagtacctaatgcaaaggagtttgcagattgggttgcaaaggttcaccagcaaccatgt
catattgtttatacagattatcgcccgacgccacttcaacactatatatttccttctggt
ggaaaaggcctgtacttggtggtggatgaaaatgccaaatttcgtgaagatagtttccag
aaagcgttgagtgccctagcccctgctgccgagggtgaaaagaagagagagaatggaaag
tggcaaaagggtgtggtggttggtaagatgggagaggaaagtgatatctttaagttggtg
aaaatgctcatacagcgtcagtatgaacctattatattgtttagcttcagcaaaagagag
tgtgaattgcttgcgatgcagatggcaaagatggatttgaatggggatgatgagaaagtg
aacatagaaactattttctggagtgcaatggacatgctatctgatgatgacaagaagctc
cctcaggttacaaatctgttacctctcttaaaacgtggaataggagttcatcattctggg
ttgctgccgattcttaaagaagtcattgaaattctgtttcaggaagggcttatcaagtgc
ttgtttgcaacagagacctttagcattggtctgaacatgcctgcgaagaccgttgtgttt
acaaatgtccgtaagtttgatggagataagttcagatggatatccagtggagagtacata
caaatgagtggccgtgctggtcggcgaggtattgatgaccgtggaatatgtattctgatg
gtagatgagaagcttgaaccttcaacagctaagatgatgcttaaaggaagtgctgatagt
ttgaacagtgcctttcatctaagctacaacatgcttttgaatcaattacggtgtgaagat
ggtaaccccgaaaatttgcttcgtaactcgttctatcaatatcaagccgatcgcgcaatt
cctgatttagagaggcaagctaaacaacttaaagaggagagaaattccattattattgaa
aaagaggaaagcttgaagaattattactcactaattgagcaatataaaagtttaaaggaa
gatgtgcgtgaaattgttttttctccgaagtattgcttacctttcttgcagcctggaaga
cttgtatgcattgaatgctcaaaaacagatgaagatctgccgtctttctccattgaagac
aatgtgagttggggtgtcattataaattttcaaagaaccaagagggtttctgaagaaagt
aaaaggccagaggatgcaagctacactcttgatgttcttgcaagatgcatggtgagcaga
gagggtgaaggaaagagaactactagaattgttccactgaaggatcctggagaacctatt
gtagtatctgttccactttctcagatatacagtttgagtaccatacgcgtgatcatgtcc
aaggaccttttgccattagaggctcgacaaaacaccttgaagaaggtttcagaagttttt
accagattttctaaggaggggattcctttgcttgatcctgaagatgatatgaaggttcaa
agcagttcatacagaaaggctgttcgtagaattgaagcattagagagtttgtttgacaag
cacgaagtggcgaagtctcctttaattaaggaaaaacttaagatattgcataagaagcaa
gaacttggtgccaagataaagtccattaaaaaacaaatgcatgcctctacggctttggca
tttaaggatgagctcaaagcaaggaaacgagttttgaggcggcttagttatgtcaccaat
gatgatgttgtggagttaaaagggaaggttgcctctgaaattagtagtgctgatgagttg
actctgacagaacttatatttaatggtgtttttaaagacatcaaggtagaagatatggtg
gccctgttgtcttgttttgtatggcaagaaaaacttcaagatgctcaaaaacctagagaa
gaacttgagctgctctttgtacaattgcaagatacagctaggagggttgcaaaagttcag
cttgagtgcaaggtgcaaatcgatgttgacaattttgtaaattcgttccggcctgatatt
atggaggcagtctatgcttgggcgaaaggatccaagttttatgagatcatggaaattacc
caggtatttgagggaagcttgattagagctatcaggagattggaagaaatccttcagcag
ctcattctcgcagctaaatctattggagaaaccgagcttgaatctaagtttgaagatgct
gtctccacgattaagagggatattgtctttgctgcatcgctatacttataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system