#=GF ID MTR4-like_stalk
#=GF AC PF21408.3
#=GF DE Exosome RNA helicase MTR4-like, stalk
#=GF AU Chuguransky S;0000-0002-0520-0736
#=GF SE PF13234
#=GF GA 24.20 24.20;
#=GF TC 24.20 24.20;
#=GF NC 24.10 24.10;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 -Z 90746521 --cpu 8 HMM pfamseq
#=GF TP Domain
#=GF RN [1]
#=GF RM 20566885
#=GF RT Structural analysis reveals the characteristic features of Mtr4,
#=GF RT a DExH helicase involved in nuclear RNA processing and
#=GF RT surveillance.
#=GF RA Weir JR, Bonneau F, Hentschel J, Conti E;
#=GF RL Proc Natl Acad Sci U S A. 2010;107:12139-12144.
#=GF RN [2]
#=GF RM 27340124
#=GF RT Structure of the frequency-interacting RNA helicase: a protein
#=GF RT interaction hub for the circadian clock.
#=GF RA Conrad KS, Hurley JM, Widom J, Ringelberg CS, Loros JJ, Dunlap
#=GF RA JC, Crane BR;
#=GF RL EMBO J. 2016;35:1707-1719.
#=GF RN [3]
#=GF RM 22114319
#=GF RT The crystal structure of S. cerevisiae Ski2, a DExH helicase
#=GF RT associated with the cytoplasmic functions of the exosome.
#=GF RA Halbach F, Rode M, Conti E;
#=GF RL RNA. 2012;18:124-134.
#=GF DR INTERPRO; IPR048392;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC Exosome RNA helicase MTR4 is a conserved RNA helicase that
#=GF CC functions together with the nuclear exosome and it is involved
#=GF CC in processing of structured RNAs, including snRNAs and snoRNAs.
#=GF CC It also plays a role in nuclear RNA surveillance pathways
#=GF CC involving the so-called TRAMP complex [1,2]. It contains an arch
#=GF CC domain, required for proper 5.8S rRNA processing, and appears to
#=GF CC function independently of canonical helicase activity [3]. The
#=GF CC arch domain comprises an helical stalk/elbow that flanks a KOW
#=GF CC module which adopts a beta-barrel fold. This entry represents
#=GF CC the helical stalk found at the N-terminal of KOW beta-barrel
#=GF CC from MTR4 [1-3]. This entry also includes Ski2-like helicases
#=GF CC which have an overall similar structure to MTR4 proteins.
#=GF CC However, Ski2 from yeast does not have the KOW motif and the
#=GF CC beta-barrel is tightly packed against the helical stalk [3].
#=GF SQ 5933
#=GS A0A8K0UB12_9AGAM/583-646 AC A0A8K0UB12.1
#=GS A0A1S8B7C2_9PEZI/605-668 AC A0A1S8B7C2.1
#=GS W9I834_FUSOX/806-873 AC W9I834.1
#=GS A0A0V1I5P1_9BILA/578-641 AC A0A0V1I5P1.1
#=GS A0A0N1I927_PAPMA/63-126 AC A0A0N1I927.1
#=GS A0A0E0IYU7_ORYNI/475-538 AC A0A0E0IYU7.1
#=GS A0A1A8AXW2_NOTFU/576-639 AC A0A1A8AXW2.1
#=GS A0A3F3Q5F2_9EURO/824-889 AC A0A3F3Q5F2.1
#=GS A0A804R1A1_MAIZE/531-594 AC A0A804R1A1.1
#=GS A0A401PHJ0_SCYTO/668-735 AC A0A401PHJ0.1
#=GS A0A2N5SD23_9BASI/570-633 AC A0A2N5SD23.1
#=GS W9HHU3_FUSOX/611-674 AC W9HHU3.1
#=GS A0A4W3K7T9_CALMI/496-559 AC A0A4W3K7T9.1
#=GS A0A7M4G277_CROPO/539-602 AC A0A7M4G277.1
#=GS A0A9P7YAJ9_9HELO/816-882 AC A0A9P7YAJ9.1
#=GS A0AAD4HM63_9AGAM/586-649 AC A0AAD4HM63.1
#=GS A0A1G4K3W7_9SACH/610-673 AC A0A1G4K3W7.1
#=GS A0A1L9N3V8_ASPTC/824-890 AC A0A1L9N3V8.1
#=GS A0A0Q4DKE7_9MICO/507-571 AC A0A0Q4DKE7.1
#=GS A0A1Y1Y7L6_9FUNG/701-768 AC A0A1Y1Y7L6.1
#=GS A0A1D2VNN2_9ASCO/760-833 AC A0A1D2VNN2.1
#=GS A0A7L1EU53_SYLBO/574-637 AC A0A7L1EU53.1
#=GS A0A1Y2CRX2_9FUNG/603-669 AC A0A1Y2CRX2.1
#=GS A0A5N7A4S0_9EURO/612-675 AC A0A5N7A4S0.1
#=GS A0AAJ6XD16_POPEU/859-924 AC A0AAJ6XD16.1
#=GS U9UE81_RHIID/555-618 AC U9UE81.1
#=GS A0A9W6BR71_9CHLO/611-674 AC A0A9W6BR71.1
#=GS A0A6P5JFV8_PHACI/760-827 AC A0A6P5JFV8.1
#=GS M1BTK6_SOLTU/513-576 AC M1BTK6.1
#=GS A0AAD8NPV3_TARER/532-595 AC A0AAD8NPV3.1
#=GS A0A421JF47_9ASCO/590-653 AC A0A421JF47.1
#=GS A0A9Q0EFN0_9TELE/557-620 AC A0A9Q0EFN0.1
#=GS A0A8C2SP95_COTJA/535-598 AC A0A8C2SP95.1
#=GS A0A5M3YPP0_ASPTE/830-895 AC A0A5M3YPP0.1
#=GS A0A397IV17_9GLOM/538-601 AC A0A397IV17.1
#=GS A0A074YWL9_AURSE/605-668 AC A0A074YWL9.1
#=GS E3Q7M2_COLGM/820-887 AC E3Q7M2.1
#=GS A0A4T0FIH0_9BASI/782-849 AC A0A4T0FIH0.1
#=GS G4NH56_PYRO7/629-692 AC G4NH56.1
#=GS A0AAE1ZKZ1_SCHME/562-623 AC A0AAE1ZKZ1.1
#=GS A0A8E5HU90_USTVR/809-876 AC A0A8E5HU90.1
#=GS A0A329SLV8_9STRA/907-984 AC A0A329SLV8.1
#=GS A0A0V1BTY9_TRISP/598-661 AC A0A0V1BTY9.1
#=GS A0A384JEG2_BOTFB/615-678 AC A0A384JEG2.1
#=GS A0A9W6BU31_9CHLO/989-1065 AC A0A9W6BU31.1
#=GS G5C6W9_HETGA/580-643 AC G5C6W9.1
#=GS A0A067LM94_JATCU/528-591 AC A0A067LM94.1
#=GS A0A9X9MGA2_BLUGR/824-891 AC A0A9X9MGA2.1
#=GS A0A3B5PT27_XIPMA/577-640 AC A0A3B5PT27.1
#=GS A0A175W4G7_9PEZI/817-884 AC A0A175W4G7.1
#=GS A0A453AZW4_AEGTS/16-79 AC A0A453AZW4.1
#=GS A0A314Z5Y1_PRUYE/521-584 AC A0A314Z5Y1.1
#=GS A0A7K6BBR0_UPUEP/572-635 AC A0A7K6BBR0.1
#=GS A0AAD6NWU9_9ROSI/75-138 AC A0AAD6NWU9.1
#=GS E3QVF0_COLGM/625-688 AC E3QVF0.1
#=GS D5UPM5_TSUPD/482-548 AC D5UPM5.1
#=GS A0A4U6MZQ2_9MICC/507-569 AC A0A4U6MZQ2.1
#=GS A0AAD9LKV2_9STRA/898-975 AC A0AAD9LKV2.1
#=GS A0A7N5ZTN3_ANATE/561-624 AC A0A7N5ZTN3.1
#=GS A0A7K5T1L2_9FRIN/575-638 AC A0A7K5T1L2.1
#=GS A0A9K3N0I3_HELAN/55-118 AC A0A9K3N0I3.1
#=GS A0A9W8CUQ4_9FUNG/622-685 AC A0A9W8CUQ4.1
#=GS A0A8K0X5X7_9PEZI/629-692 AC A0A8K0X5X7.1
#=GS A0A6A5MQF9_LUPAL/527-590 AC A0A6A5MQF9.1
#=GS A0A8I3RXW7_CANLF/789-856 AC A0A8I3RXW7.1
#=GS A0AAJ0FRH4_9PEZI/584-647 AC A0AAJ0FRH4.1
#=GS A0A2J7R3L8_9NEOP/155-218 AC A0A2J7R3L8.1
#=GS A0A8H6DM93_9HYPO/817-884 AC A0A8H6DM93.1
#=GS A0A8K0UV07_9AGAR/604-667 AC A0A8K0UV07.1
#=GS A0A3D9LAH1_9MICC/595-658 AC A0A3D9LAH1.1
#=GS A0A9R1AXQ6_TRITD/318-383 AC A0A9R1AXQ6.1
#=GS A0AAD4EE86_9AGAM/770-837 AC A0AAD4EE86.1
#=GS A0A7K7LM67_9AVES/469-532 AC A0A7K7LM67.1
#=GS A0A9P4W9R3_CURKU/602-665 AC A0A9P4W9R3.1
#=GS A0A6J1WSJ1_GALME/203-266 AC A0A6J1WSJ1.1
#=GS A0A1M6S774_9ACTN/539-600 AC A0A1M6S774.1
#=GS A0A3Q2LNP6_HORSE/582-645 AC A0A3Q2LNP6.1
#=GS A0A8C1QER0_CYPCA/785-850 AC A0A8C1QER0.1
#=GS A0A5Q4C2J0_9PEZI/627-690 AC A0A5Q4C2J0.1
#=GS A0A8C8SVB5_9SAUR/714-781 AC A0A8C8SVB5.1
#=GS A0A9E7HWK9_9LILI/700-765 AC A0A9E7HWK9.1
#=GS A0A0V1KZY4_9BILA/573-636 AC A0A0V1KZY4.1
#=GS A0A6A5S5J7_9PLEO/813-879 AC A0A6A5S5J7.1
#=GS H0WLN7_OTOGA/582-645 AC H0WLN7.1
#=GS A0AA39A1D1_VITRO/521-584 AC A0AA39A1D1.1
#=GS A0A1E3PV73_LIPST/797-863 AC A0A1E3PV73.1
#=GS A0AAD5WVC6_9PEZI/654-717 AC A0AAD5WVC6.1
#=GS A0A6A6JYP7_WESOR/813-880 AC A0A6A6JYP7.1
#=GS A0A0P9ETF3_RHOGW/616-679 AC A0A0P9ETF3.1
#=GS H2PIL8_PONAB/763-830 AC H2PIL8.2
#=GS A0AA88L508_ARTSF/704-770 AC A0AA88L508.1
#=GS A0A7M7K3T3_VARDE/562-625 AC A0A7M7K3T3.1
#=GS A0A318ZIU6_9EURO/619-682 AC A0A318ZIU6.1
#=GS A0A9N9V3A3_9HYPO/806-873 AC A0A9N9V3A3.1
#=GS G9P2M7_HYPAI/814-881 AC G9P2M7.1
#=GS A0A2K6A1F3_MANLE/582-645 AC A0A2K6A1F3.1
#=GS A0A8H8RPL1_9HELO/857-922 AC A0A8H8RPL1.1
#=GS A0A9W9M9N4_9EURO/613-676 AC A0A9W9M9N4.1
#=GS A0A1Y2F8U3_PROLT/714-778 AC A0A1Y2F8U3.1
#=GS A0A8H8SAE2_9AGAM/773-840 AC A0A8H8SAE2.1
#=GS A0A1V6TP51_9EURO/834-901 AC A0A1V6TP51.1
#=GS M7NPC3_PNEMU/592-655 AC M7NPC3.1
#=GS A0AAJ8LA24_9TREE/813-879 AC A0AAJ8LA24.1
#=GS A0AAD8BCE8_BIOPF/555-618 AC A0AAD8BCE8.1
#=GS A0A091EB00_CORBR/535-598 AC A0A091EB00.1
#=GS A0A2H3E9J1_ARMGA/766-833 AC A0A2H3E9J1.1
#=GS A0A2P7YV95_9ASCO/771-837 AC A0A2P7YV95.1
#=GS A0AAI9EBQ1_9PEZI/819-886 AC A0AAI9EBQ1.1
#=GS A0A2C5Y271_9HYPO/804-871 AC A0A2C5Y271.1
#=GS A0AAD9M4D5_9PEZI/625-688 AC A0AAD9M4D5.1
#=GS A0A0D9RV11_CHLSB/582-645 AC A0A0D9RV11.1
#=GS A0A9W9S7F5_9EURO/613-676 AC A0A9W9S7F5.1
#=GS A0A852KN93_UROIN/469-532 AC A0A852KN93.1
#=GS A0A8D2PTE1_ZOSLA/526-589 AC A0A8D2PTE1.1
#=GS A0A9N8V086_9GLOM/563-626 AC A0A9N8V086.1
#=GS A0A0D2B3B1_9EURO/603-666 AC A0A0D2B3B1.1
#=GS A0A8C5PAT6_9ANUR/572-635 AC A0A8C5PAT6.1
#=GS A0A673N6M8_9TELE/498-561 AC A0A673N6M8.1
#=GS A0A448YM86_BRENA/606-669 AC A0A448YM86.1
#=GS A0A8T1WZP7_9STRA/589-652 AC A0A8T1WZP7.1
#=GS A0A167IP00_CALVF/788-854 AC A0A167IP00.1
#=GS A0AAD8GLB9_ACIOX/572-635 AC A0AAD8GLB9.1
#=GS A0A7K5QFH6_9PASE/574-637 AC A0A7K5QFH6.1
#=GS A0A673FVR0_9TELE/595-658 AC A0A673FVR0.1
#=GS A0A2I0AIL0_9ASPA/793-856 AC A0A2I0AIL0.1
#=GS A0A2V1AWM3_9ASCO/581-644 AC A0A2V1AWM3.1
#=GS A0A8N4F1I7_ELAGV/500-563 AC A0A8N4F1I7.1
#=GS A0A1V4KRS9_PATFA/574-637 AC A0A1V4KRS9.1
#=GS A0A7K5ZYA2_ONYCO/492-555 AC A0A7K5ZYA2.1
#=GS A0A9W8E274_9FUNG/594-657 AC A0A9W8E274.1
#=GS A0A5A7PS52_STRAF/845-910 AC A0A5A7PS52.1
#=GS A0A2G8KZC4_STIJA/569-632 AC A0A2G8KZC4.1
#=GS A0AAE1M0Q4_9HYPO/618-681 AC A0AAE1M0Q4.1
#=GS A0A445DVI1_ARAHY/539-602 AC A0A445DVI1.1
#=GS A0AAA9T275_BOVIN/718-785 AC A0AAA9T275.1
#=GS A0A8X7PCN6_BRACI/456-519 AC A0A8X7PCN6.1
#=GS A0A0D9P8Q4_METAN/801-868 AC A0A0D9P8Q4.1
#=GS A0A8T1NP42_CARIL/616-681 AC A0A8T1NP42.1
#=GS A0A9R1B8T4_TRITD/865-930 AC A0A9R1B8T4.1
#=GS A0A0R0K5X3_SOYBN/530-593 AC A0A0R0K5X3.1
#=GS A0AA88SD07_9ASTE/470-533 AC A0AA88SD07.1
#=GS A0A4W5N241_9TELE/502-565 AC A0A4W5N241.1
#=GS A0A671PZD9_9TELE/505-568 AC A0A671PZD9.1
#=GS A0A251QWD2_PRUPE/527-590 AC A0A251QWD2.1
#=GS A0A8H6WEM8_MYCCL/576-639 AC A0A8H6WEM8.1
#=GS A0A8J2F8I9_9DINO/318-381 AC A0A8J2F8I9.1
#=GS A0A341D277_NEOAA/580-643 AC A0A341D277.1
#=GS A0A1E4RCJ1_9ASCO/786-858 AC A0A1E4RCJ1.1
#=GS A0A671PUU1_9TELE/529-592 AC A0A671PUU1.1
#=GS A0AAJ0BQD2_9PEZI/591-654 AC A0AAJ0BQD2.1
#=GS A0A5E4C1I1_MARMO/763-830 AC A0A5E4C1I1.1
#=GS A0A2K5WFP7_MACFA/763-830 AC A0A2K5WFP7.2
#=GS A0AAD9RTQ6_9HYME/566-629 AC A0AAD9RTQ6.1
#=GS A0A6I9QBI4_ELAGV/521-584 AC A0A6I9QBI4.1
#=GS A0A8H4CAI3_COLGL/625-688 AC A0A8H4CAI3.1
#=GS A0A1X2IXE4_9FUNG/599-662 AC A0A1X2IXE4.1
#=GS A0A9Q8PBU3_PASFU/816-883 AC A0A9Q8PBU3.1
#=GS A0A6H5K931_9PHAE/229-295 AC A0A6H5K931.1
#=GS A0A2K6Q9F6_RHIRO/668-735 AC A0A2K6Q9F6.1
#=GS A0A6P6NTI1_CARAU/774-839 AC A0A6P6NTI1.1
#=GS T5AGW2_OPHSC/805-872 AC T5AGW2.1
#=GS A0A2I0WS63_9ASPA/533-596 AC A0A2I0WS63.1
#=GS A0A9P1HLE1_9BILA/572-635 AC A0A9P1HLE1.1
#=GS A0A2I2FE92_ASPCN/612-675 AC A0A2I2FE92.1
#=GS F6H9P7_VITVI/530-593 AC F6H9P7.1
#=GS A0A4U6X7G6_9PEZI/626-689 AC A0A4U6X7G6.1
#=GS A0A6G1HTD2_9PEZI/600-663 AC A0A6G1HTD2.1
#=GS A0A5N6QSR5_9ROSI/529-592 AC A0A5N6QSR5.1
#=GS A0A124SDE0_CYNCS/859-924 AC A0A124SDE0.1
#=GS A0AAD5TQ59_9FUNG/625-688 AC A0AAD5TQ59.1
#=GS A0A6A6H3Q1_VIRVR/815-882 AC A0A6A6H3Q1.1
#=GS A0A8B7MV49_PHODC/535-598 AC A0A8B7MV49.1
#=GS A0A6A6ASC9_9PLEO/810-877 AC A0A6A6ASC9.1
#=GS A0A9P9WLA1_9PEZI/626-689 AC A0A9P9WLA1.1
#=GS A0A4T0IQZ5_WALIC/613-676 AC A0A4T0IQZ5.1
#=GS A0A4Y7R7Z8_COPMI/615-678 AC A0A4Y7R7Z8.1
#=GS A0A9P7CTV6_9FUNG/759-826 AC A0A9P7CTV6.1
#=GS Q23RU3_TETTS/861-930 AC Q23RU3.2
#=GS C5E350_LACTC/607-670 AC C5E350.1
#=GS A0A9W7XQC5_9FUNG/735-801 AC A0A9W7XQC5.1
#=GS A0A9P7V3X6_9AGAR/657-723 AC A0A9P7V3X6.1
#=GS A0A319DDL9_9EURO/825-891 AC A0A319DDL9.1
#=GS A0A2R6RI51_9APHY/770-838 AC A0A2R6RI51.1
#=GS A0A8C3ISE6_CHRPI/643-706 AC A0A8C3ISE6.1
#=GS A0A0E0G1L4_ORYNI/873-938 AC A0A0E0G1L4.1
#=GS M4BC82_HYAAE/592-655 AC M4BC82.1
#=GS A0A6J5W2X5_PRUAR/566-629 AC A0A6J5W2X5.1
#=GS R8BW95_PHAM7/619-682 AC R8BW95.1
#=GS A0A1S2Y898_CICAR/830-895 AC A0A1S2Y898.1
#=GS A0A8S1J255_9CHLO/826-898 AC A0A8S1J255.1
#=GS A0A0G2H5G4_PHACM/606-669 AC A0A0G2H5G4.1
#=GS A0A9W9Q6Q5_9EURO/825-891 AC A0A9W9Q6Q5.1
#=GS A0A067LDJ7_JATCU/838-903 AC A0A067LDJ7.1
#=GS A0A3S9W9K7_9MICO/518-582 AC A0A3S9W9K7.1
#=GS A0A0R3XAN6_HYDTA/548-570 AC A0A0R3XAN6.1
#=GS A0A2I0WY36_9ASPA/92-155 AC A0A2I0WY36.1
#=GS V4BUA2_LOTGI/565-628 AC V4BUA2.1
#=GS A0A453HI05_AEGTS/622-685 AC A0A453HI05.1
#=GS A0A7J6UTU4_THATH/431-494 AC A0A7J6UTU4.1
#=GS A0A8C5WTI5_LATLA/680-747 AC A0A8C5WTI5.1
#=GS A0A2G5EV18_AQUCA/431-494 AC A0A2G5EV18.1
#=GS A0A0P7V389_SCLFO/573-636 AC A0A0P7V389.1
#=GS A0A1E5VEE2_9POAL/624-687 AC A0A1E5VEE2.1
#=GS A0A673W2E4_SALTR/524-587 AC A0A673W2E4.1
#=GS A0A7K9KNP1_9PASS/587-650 AC A0A7K9KNP1.1
#=GS A0A9P4HS86_9PEZI/819-884 AC A0A9P4HS86.1
#=GS A0A0E0MD28_ORYPU/535-598 AC A0A0E0MD28.1
#=GS A0A0K9PZL4_ZOSMR/545-607 AC A0A0K9PZL4.1
#=GS A0AAD4CJW3_ASPNN/613-676 AC A0AAD4CJW3.1
#=GS A0A1E4T9N9_9ASCO/598-661 AC A0A1E4T9N9.1
#=GS A0AA41N704_SCICA/582-645 AC A0AA41N704.1
#=GS A0A7K9DJ65_9AVES/490-553 AC A0A7K9DJ65.1
#=GS A0A2G4SQ17_RHIZD/778-845 AC A0A2G4SQ17.1
#=GS A0A833RDB7_9POAL/751-816 AC A0A833RDB7.1
#=GS A0A9P7Z7G1_9HELO/606-669 AC A0A9P7Z7G1.1
#=GS A0A8V8TN04_HUMAN/718-785 AC A0A8V8TN04.1
#=GS A0AAE8MJQ3_9HYPO/803-870 AC A0AAE8MJQ3.1
#=GS A0A8T2T9H0_CERRI/730-798 AC A0A8T2T9H0.1
#=GS A0A094GZW0_9PEZI/610-673 AC A0A094GZW0.1
#=GS A0A5B0PI62_PUCGR/805-872 AC A0A5B0PI62.1
#=GS A0A9W9IFI7_9EURO/613-676 AC A0A9W9IFI7.1
#=GS A0A1B8B4X5_FUSPO/615-678 AC A0A1B8B4X5.1
#=GS Q6BU75_DEBHA/592-655 AC Q6BU75.1
#=GS A0A9W8UCX0_9HYPO/803-870 AC A0A9W8UCX0.1
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