KEGG   Collinsella aerofaciens: CSV91_04565
Entry
CSV91_04565       CDS       T05143                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
caer  Collinsella aerofaciens
Pathway
caer03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:caer00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CSV91_04565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caer03019]
    CSV91_04565
Enzymes [BR:caer01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CSV91_04565
Messenger RNA biogenesis [BR:caer03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CSV91_04565
SSDB
Motif
Pfam: DEAD Helicase_C ResIII HEM4 AAA_22 CMS1
Other DBs
NCBI-ProteinID: ATP53868
UniProt: A0A2D1TWX4
Position
complement(1048378..1050627)
AA seq 749 aa
MRNSVSDVTDAEILDETREAMTQAAFDAADEANAAQAVESATESLPAFDELGLSDEMLRA
IENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMNNLEHIAPPKPVRER
SGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVASKIADVTGHVAVTVVGGVSYKP
QTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDMGFLPAVRRIVRET
PAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATSTADTVDQFVFPVSIEAKNNLLP
EFLKKEGPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQAQRERALSAFRDGTVD
VLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRAGELGWAITFVTEQDVDEF
YEIEKLMDKTADIYEAGDLHVGPNPPAVDPERDPAAFKVKKKTKRGKSKSKKKLEQARRD
GKRNGDDYGDVAGRSNRGRDERRGDGERPSRPKRGGKTRVREGVQARVDEAVESVAREVA
AEERAGAGAAEQPARGNRAERRAKQFQGEAHRRRREDEDRGGRRRVEREDEGRGSRGGKR
GSGDRRRSGRDDERSGRDERRGGEGRGERGARGGESRGGKRFEERGVRGGERREGARGNG
GRGGAGRSGESRDRRDPRASRDRRDDWRNYDDTREERRGGYRGGRGGNQAGSRGGRAGGR
DNRGSYGNSRGGKRGGSSRRPGDGGGKRK
NT seq 2250 nt   +upstreamnt  +downstreamnt
atgcgtaattctgtatccgacgtcacggacgccgagattctggacgagacccgcgaggcc
atgacccaggctgccttcgatgcggccgatgaggccaatgctgcccaggccgtcgagtcc
gctaccgagagcctgcccgcctttgacgagctggggctttcggacgagatgcttcgtgct
atcgagaacctgggctacacggcgccgacgcctgttcaggccggctcgattcctgtggtg
ctcgaaggccgcgacctgcttgccgccgctcagactggcaccggcaagacggccgctttc
ttgctgccgaccatgaacaacctggagcacatcgctccgcccaagcctgtgcgcgagcgc
agcggccgcaaccgccgtcgcggcgctaaaaagcccgagggcaacggccgcggccccgtg
atgctcgtcatcacccccacgcgcgagcttgcccagcagatcgacgaggtcgcgagcaag
atcgccgacgtcaccggtcatgtcgccgtgaccgtcgtgggcggcgtgagctacaagccg
cagaccgctgccctcaagtacggctgcgacatcctggtcgccacgccgggccgtttggtc
gatttgatcgagcagggcgcctgccacctggacgaggtcaaggtgctggtgctcgacgag
gccgaccgcatgctcgacatgggctttttgcccgccgtccgccgcattgtgcgcgagacg
ccggccgagcgccagacgctgctgttctcggccacgctcgacgaggaggccgtgggcgag
atcaccgacctggtgagcgatccggcccgcgtggagatcgcgcccgccacgtcgaccgcc
gacaccgtcgaccagtttgtgttcccggtgtccatcgaggcaaagaacaacctgctgccc
gagttcctcaaaaaggaaggcccggagcgcactatcgtctttatgcgcaccaagcaccgc
gccgacagctgctgccgtcgtctggagcgtaagggcatcaaggccgccgcgattcacggc
aaccgcagccaggcccagcgcgagcgtgccctttcggccttccgcgacggtaccgtcgac
gtgctggtggcgaccgacgtgcttgcccgcggcatcgacatcagcgatgtgcgctacgtc
gtgaactttgacgtgccggccgagccgaccgactacatccaccgtattggccgtacgggc
cgcgccggcgagctgggctgggccattacgtttgtgaccgagcaggacgtcgatgagttc
tacgagattgagaagctcatggacaagaccgccgacatctacgaggccggcgacctgcat
gtgggtcccaatccgcccgcggttgaccccgaacgcgaccctgcagcctttaaggtgaag
aagaagaccaagcgcggcaagtccaagagcaagaagaagcttgagcaggcacgtcgtgac
ggcaagcgtaacggcgatgactacggcgatgtggccggtcgttccaaccgcggtcgcgat
gagcgccgcggcgacggcgagcgtccgagccgtcccaagcgcggcggcaagacccgcgtg
cgcgagggcgttcaggctcgcgtggacgaggccgtggagagcgtggcccgcgaggtggct
gccgaggagcgcgctggtgctggtgccgctgagcagcctgcgcgcggtaaccgtgccgag
cgtcgtgccaagcagttccagggcgaggcacaccgccgccgtcgtgaggacgaggatcgc
ggtggccgtcgtcgtgtcgagcgcgaggacgagggccgtggttcgcgcggcggcaagcgc
ggctcgggtgaccgtcgtcgttccggtcgtgatgacgagcgcagtggccgtgatgagcgc
cgcggcggcgagggtcgcggtgagcgaggtgcccgcggcggtgagtcccgtggcggcaag
cgctttgaagagcgcggcgtccgtggcggcgagcgtcgcgagggtgctcgcggcaatggc
ggccgcggcggcgctggccgctctggtgagtcgcgcgatcgtcgtgatccgcgtgccagc
cgcgatcgtcgcgatgactggcgcaactacgacgacacccgcgaggagcgtcgtggcggc
tatcgtggcgggcgtggcggcaaccaggccggctcccgcggcggtcgtgccggcggtcgc
gataaccgtggcagctatggcaacagccgtggtggcaagcgcggcggcagctcccgtcgc
cccggtgacggcggcggcaagcgcaaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (110)   
   KEGG ORTHOLOGY (1)   
   RefGene (107)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (123)   

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