KEGG   Cricetulus griseus (Chinese hamster): 100752504
Entry
100752504         CDS       T02813                                 
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B isoform X2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cge  Cricetulus griseus (Chinese hamster)
Pathway
cge03013  Nucleocytoplasmic transport
cge03015  mRNA surveillance pathway
cge03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cge00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100752504
  09122 Translation
   03013 Nucleocytoplasmic transport
    100752504
   03015 mRNA surveillance pathway
    100752504
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cge03019]
    100752504
   03041 Spliceosome [BR:cge03041]
    100752504
Enzymes [BR:cge01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100752504
Messenger RNA biogenesis [BR:cge03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100752504
Spliceosome [BR:cge03041]
 Complex C
  Other components
   EJC/TREX
    100752504
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100752504
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 100752504
NCBI-ProteinID: XP_035307140
UniProt: A0A9J7HBH6
Position
1
AA seq 343 aa
MDVLCQAKSGMGKTVVFVLATLQQLEPITGQVSVLVMCHTRELAFQISKEYERFSKYMPN
VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML
EQLDMRRDVQEXFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGL
QQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSMQRCIALAQLLVEQNFPAIAIHRSMP
QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGTKC
LAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggatgtcctgtgccaggccaagtcaggcatggggaagacagtagtgtttgtcctggcc
acactgcagcagctggagccaatcactgggcaggtgtctgtgctggtgatgtgtcacact
agggagttggcttttcagatcagcaaggaatacgagcgcttctcaaagtacatgccgaat
gtcaaggtggcagtgttttttggcggtctgtctatcaagaaggatgaagaggtgctgaag
aagaactgcccacacatcgtggtggggactcctggccgaattctagccctggctcgaaat
aagagcctgaacctcaagcacattaaacactttatcttggacgaatgtgacaagatgctt
gaacagctcgacatgcgtcgggatgtccaggaanattttcgcatgaccccccatgagaag
caggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccgcaagttc
atgcaagatcctatggagatcttcgtggatgatgagaccaagttgacgctgcacgggttg
cagcaatactacgtgaaactgaaggacaacgagaagaaccggaagctctttgaccttctc
gatgtccttgagttcaaccaggtggtgatctttgtgaagtccatgcagcggtgcatcgcc
ctggcccagcttctggtggagcagaacttccccgccattgctatccaccgcagcatgccc
caggaggagaggctctctcggtatcagcagttcaaggatttccagcggaggattcttgtg
gccaccaacctgtttggtcgaggcatggacattgagcgtgtgaacatcgccttcaactat
gacatgccagaggattcggacacctacctgcaccgggtggccagagcaggcaccaagtgc
ttggccatcacatttgtgtcagatgagaacgatgctaagatcctcaatgacgtgcaggac
cgctttgaggtcaacatcagtgagctccccgatgagatcgacatctcctcctacattgaa
cagacacggtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (28)   

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