KEGG   Cucumis melo (muskmelon): 103488306
Entry
103488306         CDS       T03195                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cmo  Cucumis melo (muskmelon)
Pathway
cmo03013  Nucleocytoplasmic transport
cmo03015  mRNA surveillance pathway
cmo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103488306
  09122 Translation
   03013 Nucleocytoplasmic transport
    103488306
   03015 mRNA surveillance pathway
    103488306
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmo03019]
    103488306
   03041 Spliceosome [BR:cmo03041]
    103488306
Enzymes [BR:cmo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103488306
Messenger RNA biogenesis [BR:cmo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     103488306
Spliceosome [BR:cmo03041]
 Complex C
  Other components
   EJC/TREX
    103488306
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    103488306
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 103488306
NCBI-ProteinID: XP_008445205
UniProt: A0A1S3BC35
Position
3:26799555..26804837
AA seq 427 aa
MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILAL
SRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQID
TSTYMPS
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgggagaaacaagagacaacgaatatgaggaagagctcctcgactacgaggaagaagaa
gagaaggcccccgattccgttggagctaaagtcaacggtgaagctggaaagaagggttat
gtcggaattcatagttcgggattcagagactttctattgaagccagagcttctccgtgcg
attgtagactctggatttgagcatccatctgaagtacaacatgaatgtattccccaagct
atcctcggcatggatgttatttgtcaagctaaatctggtatgggtaaaactgctgtcttt
gttctgtcaacgctgcagcagattgaccctgtggctggtcaagtatctgccctagttctg
tgccataccagggagcttgcataccagatctgtcatgagttcgaaaggttcagcacttat
cttccggatctgaaggttgctgtcttctatggtggagtgaatattaaaattcacaaagat
cttctgaaaaatgaatgtcctcatattgttgttggaacacccggaaggatattggcactg
tcgagagataaagacctatccctgaagaatgtccgacattttatcttggacgagtgtgac
aagatgcttgagtcacttgatatgcggagggatgtacaagagatcttcaagatgactcct
cacgacaaacaagttatgatgttttctgcaacacttagcaaagaaatccgcccagtttgc
aagaagtttatgcaagatccaatggaaatatatgtagatgatgaggcaaagctgacattg
catggtcttgtccagcactacatcaaattgagcgagatggagaaaaatcggaagttgaac
gaccttcttgatgcattggacttcaatcaagtggttatttttgtcaaaagtgttaatagg
gcagctgagctagataagttattggtggagtgtaacttcccctctatatgcatccactct
ggcatgtcgcaggaagagaggttgactcgatacaaaggttttaaggaaggacataagcgc
attcttgtggctacagatttggttggtcgaggaattgacattgaacgtgtaaacattgtt
atcaattatgatatgccagattcagctgatacatatctgcacagggttggcagagctggt
agatttggtaccaaagggcttgcaattacttttgtgtcatctgcagctgattctgatgtt
ctcaacaatgttcaagaaaggtttgaagtcgatattaaggagcttccagagcagattgat
acctccacttacatgccatcatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (28)   

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