KEGG   Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ005981
Entry
CpipJ_CPIJ005981  CDS       T01079                                 
Name
(GenBank) ATP-dependent RNA helicase DOB1
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
cqu  Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cqu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CpipJ_CPIJ005981
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cqu03019]
    CpipJ_CPIJ005981
   03041 Spliceosome [BR:cqu03041]
    CpipJ_CPIJ005981
   03009 Ribosome biogenesis [BR:cqu03009]
    CpipJ_CPIJ005981
   03016 Transfer RNA biogenesis [BR:cqu03016]
    CpipJ_CPIJ005981
Enzymes [BR:cqu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CpipJ_CPIJ005981
Messenger RNA biogenesis [BR:cqu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     CpipJ_CPIJ005981
Spliceosome [BR:cqu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    CpipJ_CPIJ005981
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    CpipJ_CPIJ005981
Ribosome biogenesis [BR:cqu03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    CpipJ_CPIJ005981
Transfer RNA biogenesis [BR:cqu03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    CpipJ_CPIJ005981
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk ResIII Helicase_C nSTAND3 Death_3 AAA_22 ATPase_2
Other DBs
NCBI-ProteinID: EDS25918
VectorBase: CPIJ005981
UniProt: B0WF10
AA seq 1045 aa
MAAVDDLFNLFDAENEEEDDGGSVPIVVPEDKPGKIEVDDDGDEGAVKEAEPVATKRELE
KIEVDDEDDDDVEEVEPCKKAKLVESLLDDINLDNIESRIKVHTIQSPEACTHEVAVYPD
HKYMPLVAPTGKPAKEYQFVLDPFQKEAILCIENQQSVLVSAHTSAGKTVVAEYAIAKSL
AEKQRVIYTTPIKALSNQKYREFHEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRG
SEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCHI
HKQPCHVVYTDYRPTPLQHYLFPVGGDGIHLVVDEKGTFKEDNFNTAMAVLQNAGEAAKG
DQKGKKGGLKATNSGETNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMSKLDFNSTT
EKKLVDEVFNNAMDVLSEEDRQLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGL
IKALFATETFAMGLNMPARTVLFTGPRKFDGKDFRWVTSGEYIQMSGRAGRRGLDDKGIV
ILMIDEAVSPAVGKEIVQGKPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQ
SSIPEIYKKVQRKQKELEGVHIKDEQSIMTYHNVREQLDTLGKQFRDYITRPTYLVPFLQ
PGRMIKIKSDAGEFEWGIIVNFKKETVDAKANPLKSETKVIIDVLLHVDDGFEKEGVPKP
CPPSKRGSVEVVPVLHSLVHRISSLRVYYPNDLRPADNRRSVLKTINEVKKRFPAGPPLL
NPINDMHIKEKDFQDTVDLIDKFEKRLFAHPLHDSPELDKLYTKYMGKLEIERALKQEKN
SLREAKSLLHMDELKHRKRVLRRLGYCTTADVIEFKGRVACELSCADELLLTEMIFNGTF
TNLTTAQACALLSCFVCDEKSTELPAATEELSGPLRQMQDLARRIAKVSNECKVELDEER
YVESFKPFLMDVVLAWCKGSSFLQLCKMTDIFEGSIIRCMRRLEELLRQMVQASKTIGNT
DLENKFADAIRLLKRDIVFAASLYL
NT seq 3138 nt   +upstreamnt  +downstreamnt
atggccgccgtcgacgatctgttcaacctgtttgacgccgagaacgaggaggaggacgac
ggcggaagcgttccgatcgtggtcccggaagataagccgggcaagattgaggtggatgac
gacggcgatgagggtgcggtgaaggaggcggaaccggtggccacaaagcgggagctggag
aagattgaagtcgacgacgaggacgatgacgatgtggaggaggttgaaccgtgtaaaaag
gcgaagcttgttgagtcgctgctggatgatataaacttggacaacatcgagtctcggatt
aaggtgcacacgattcagtcgccggaggcgtgcacgcacgaggtggccgtctatccggat
cacaagtacatgccgttggtggcgccaacggggaaacctgctaaggagtaccagttcgtg
ctggatccgttccagaaggaggcgattctgtgcattgagaatcagcagtcggtgctggtg
tcggcgcacacttcggcgggaaagacggtggtggcggagtacgcgattgccaagtcgctg
gcggagaagcagcgggtcatttacacgacgccaatcaaggcgttgtcgaaccagaagtac
cgggagtttcacgaggagtttaaggacgtagggttggtgacgggggacgtgacgattaat
ccgtcggcgtcgtgcctgattatgacgacggagattctgcggaacatgctgtaccggggg
tcggagattatgcgggaggttggttgggtcgtgtttgacgagattcactacatgagggac
aaggagcggggcgtggtttgggaggagacgttgattctgctgccggacaacgtgcattac
gtgtttttgtcggcgacgattccgaacgcgcgccagttcgccgagtgggtttgtcacatc
cacaagcagccgtgccacgtggtctacacggactatcggccgacgccgctgcagcactat
ttgttcccggttgggggtgacggaattcatctggtcgtggacgagaagggaaccttcaag
gaggacaactttaacacggcgatggcggtgctgcagaacgccggggaagcggccaaaggt
gaccagaagggcaaaaagggcgggttgaaggcgaccaactcgggcgagaccaacatcttc
aagatcgtcaagatgatcatggagcgcaactttgccccggtcatcatcttctcgttcagc
aaaaaggactgcgaaatctacgcaatgcaaatgtccaaactggacttcaactccaccacc
gagaagaagctggtcgacgaggtgttcaacaacgcgatggacgtgctcagcgaggaggat
cgccaacttccccaagtggagaacgtgctgccgctgctgcgccgcggaatcggcatccat
cacggtgggttgcttccgatcttgaaggaaaccatcgaaatcctgttcggtgaagggttg
atcaaggcgctcttcgcgacggagaccttcgccatgggactgaacatgccggcgcgaacg
gttctctttaccgggccgaggaagtttgacggaaaggacttccgctgggtcacctccggc
gagtacatccagatgtcgggacgagctggtcgtcgtggcctggacgacaaaggtatcgtc
attctgatgattgacgaagcggtttccccggcggtcgggaaagagatcgttcagggcaaa
cccgatccgatcaactcggcgttccacttgacctacaacatggtgttgaacctgcttcgc
gtcgaggaaatcaaccccgagtacatgctggagcgatcgttcttccagttccagaaccaa
tcctcaatccccgaaatctacaaaaaggtccagcgcaagcagaaagagctcgaaggcgtc
cacatcaaagacgaacaatcgatcatgacgtaccacaacgtgcgcgagcagctcgacacg
ctcggcaagcagttccgcgactacatcacgaggccaacctacctggtcccgttcctccag
cccggccgcatgatcaagatcaaatccgacgccggcgagttcgagtggggcatcatcgtc
aacttcaaaaaagaaaccgtcgacgccaaagccaaccccctcaaatccgaaaccaaggtc
atcatcgacgtcctcctccacgtcgacgacggcttcgaaaaggaaggcgtccccaaaccc
tgcccaccctccaagcgcggctccgtcgaagtcgtccccgtcctgcattccctcgtccac
cgcatcagctcccttcgcgtctactacccgaacgacctccgccccgccgacaaccgccgc
tccgtcctcaaaaccatcaacgaagtcaagaaacgcttccccgccggcccgcccctcctt
aaccccatcaacgacatgcacatcaaggaaaaggacttccaagacaccgtcgacctcatc
gacaagttcgagaagcgactcttcgcccaccccctccacgactcccccgaactcgacaaa
ctctacaccaagtacatgggcaaactggaaatcgaacgcgccctcaaacaggaaaagaac
tccctccgcgaagccaagtccctcctccacatggacgagctcaagcaccgcaagcgcgtc
ctccgccgactcggctattgcaccaccgccgacgtcatcgagttcaaaggccgcgtcgcg
tgcgaactcagctgcgccgatgaactcctgctcaccgaaatgatcttcaacggcaccttc
accaacctcaccacagcccaagcctgcgccctgctctcatgcttcgtgtgcgacgaaaag
agcacggaactccccgccgccaccgaagaactgtccggcccgctccgccaaatgcaggat
cttgcgcggcgaatcgccaaagtgtccaatgagtgcaaggtcgagctggacgaggaacgc
tacgtggaatcgttcaagccattcctcatggacgtcgtgctcgcgtggtgcaaaggttca
tccttcctgcagctgtgcaagatgacggacatctttgaggggtcgatcattcggtgtatg
cgacggctcgaggagttgctgcggcagatggtacaggcctccaagacgatcggcaatacg
gacctggagaacaagtttgccgacgcgatacggctgctcaagagggacattgtgtttgcg
gcgtcgttgtatttgtaa

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   VECTORBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (24)   

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