KEGG   Capsella rubella (pink shepherd's-purse): 17885209
Entry
17885209          CDS       T02984                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    17885209
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crb03041]
    17885209
   03009 Ribosome biogenesis [BR:crb03009]
    17885209
Enzymes [BR:crb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     17885209
Spliceosome [BR:crb03041]
 Complex A
  U2 snRNP components
   U2 related factors
    17885209
 Complex B
    17885209
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    17885209
Ribosome biogenesis [BR:crb03009]
 Eukaryotic type
  90S particles
   Helicases
    17885209
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N Helicase_C DEAD AAA_22 AAA_19 ABC_tran ResIII nSTAND3 SRP54 T2SSE AAA_7 AAA_30 PhoH
Other DBs
NCBI-GeneID: 17885209
NCBI-ProteinID: XP_023639220
Position
Unknown
AA seq 725 aa
MGTERKRKVSLFDVMDDPSAPPKHGKINGLPDVGINSLVNKWNGKPYSQRYYDILEKRRT
LPVWLQKEEFLKTLNSHQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVGCTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLER
YKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVG
NLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAFKQNNEDPNWCYENFINNRAMKSADNVRQQLVRIMSRFNL
KMCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDIRGEWLVDVASHYYDLSNFPNCEAKRVLEKLYKKREREKEE
SKSRK
NT seq 2178 nt   +upstreamnt  +downstreamnt
atgggtacagagagaaagaggaaagttagtttgttcgacgttatggacgatccgtcggct
ccaccgaagcacggcaaaatcaatggtcttcccgacgtcggaatcaacagtctcgtcaat
aaatggaacgggaagccttattcacagaggtattatgatattttggagaaacggaggact
cttcctgtctggctgcaaaaagaggagtttctcaaaactttgaacagccatcagaccctt
attcttgtcggtgagaccggtagtggtaaaactacccagatcccacagttcgttatagat
gctgtggacgctgaaacttcggataagcgtaggaagtggttggttggatgcacacagcct
cgtagagttgcagccatgtctgtgtctcgtcgtgttgctgaagagatggatgttactata
ggggaagaagttggttacagcattcgttttgaggactgcagtagccccagaaccgtgctt
aagtacttgactgatggtatgctcctgagagaagcaatggcggacccgctcctagagaga
tacaaagtgatcattctcgatgaggcccacgaaagaactctagccacagatgtgctcttt
ggtcttctcaaggaagtgttgaaaaatagacctgatcttaagttagttgtgatgagtgct
actctagaagctgaaaagtttcaggaatattttagcggtgctcctctgatgaaagttccg
ggtaggcttcatccagttgagatcttttacactcaggagcctgagagggactatcttgag
gctgctattagaactgttgttcagatccacatgtgtgagccacctggtgatattcttgtt
ttcttaactggggaggaggagattgaagatgcctgccgcaaaatcaataaagaggttggt
aatcttggggatcaggtgggacctgttaaagtcgtgccactgtattctactcttccacct
gcgatgcagcagaagatatttgatcctgctccagagccggtaactgaaggtggtcctcct
gggagaaagattgttgtctccactaacattgctgagacttccctaactatagatgggatt
gtctatgtcattgaccctggttttgctaagcaaaaagtctacaacccacgaatccgtgtt
gagtcattgttggtgtccccgatttctaaggcaagtgctcaccagagatctggtcgtgct
ggtagaacaaggcctggaaaatgcttcaggctttatacagagaagagtttcaataatgac
ttgcagccgcagacctatcctgaaatattaagatcaaaccttgcaaacactgttctgacc
ttgaaaaaactgggtatcgatgacctggtgcacttcgattttatggatccccctgctcct
gaaacgctgatgcgagccttagaagttttgaattacttgggagcactggatgatgaaggt
aacttgacaaagacaggtgagataatgagtgagttccccttggatccacagatggcaaag
atgctcatagtcagtcctgaattcaactgctcaaacgagattctctctgtttcagccatg
ctttcagtaccgaattgctttattcggcctagagaggctcaaaaagcagcagatgaagct
aaagctaggtttggacacattgatggagatcacctcacattgttgaatgtctaccatgct
tttaagcaaaataatgaagatcccaattggtgctatgaaaacttcatcaacaatagagca
atgaaatctgcagacaatgttagacagcagctagtccggataatgtcaaggttcaacctg
aagatgtgcagcactgattttaacagccgcgactactacattaatataaggaaggccatg
cttgccggttatttcatgcaagtggctcacttagaacgcactggccattacttgacagtc
aaagacaatcaagtggttcatctgcatccatcaaattgcttggatcacaaacctgagtgg
gtaatctacaacgaatatgttttgactagccggaatttcatcagaactgtgacagatatt
cgcggtgaatggctagtagatgttgcttctcattactatgatctttccaactttcccaac
tgcgaagcgaaacgtgtcctcgagaagctttataagaagagagaaagggagaaggaagag
agcaagagccggaagtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (15)   
   Pfam (15)   
All databases (29)   

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