KEGG   Camelina sativa (false flax): 104723214
Entry
104723214         CDS       T05044                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
  KO
K13117  ATP-dependent RNA helicase DDX35 [EC:5.6.2.6]
Organism
csat  Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:csat00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csat03041]
    104723214
Enzymes [BR:csat01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     104723214
Spliceosome [BR:csat03041]
 Complex C
  Other components
   Complex C specific factors
    104723214
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C DEAD AAA_22 AAA_30 AAA_19 HA2_N ResIII AAA_23 AAA_7 nSTAND3 SRP54 T2SSE AAA_29
Other DBs
NCBI-GeneID: 104723214
NCBI-ProteinID: XP_010439848
Position
11:complement(13591645..13596559)
AA seq 695 aa
MAFWKPGTEKRRFEDDGEGGIVFMSNNLASSSSSSNGYANIEKQRQRLPVYKYRTEILYL
VENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQAVSARVAEEMGV
NLGNEVGYTIRFEDQTTSGVTSVKFLTDGVLIREMMEDPLLSKYSVIMIDEAHERSISTD
ILLGLLKKIQRRRPELRLIISSATIEAKAMFNFFNSSKKRHAPEGSAQGPKLEPAILSFE
GRGFSVKIHYVEEPVSDYIRSVVSTILLINEREPPGDVLVFLTGQEDIETAIKLLEEEAH
SNQKNSSGLLPLPLYSGLSRSDQELIFSPTPRGKRKVILSTNIAETSLTLEGVVYVIDSG
FSKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLNQMPGEGIP
EMQRSNLVSTVIQLKALGIDNILGFDWPSPPSPQAMIRALEVLYSLQILDDDAKLTSPTG
FQVAELPLDPMISKMILASSELGCTDEIITIAAVLSIQSVWVIARGVQKEQDEAKLRFAA
AEGDHVTFLNVYKGFLESKKSSQWCAKNFLNYQSMKKVVEIRDQLKRIARRLGVTLKSCD
GDMEAVRKAVTAGFFANACRLEPHSNGVFKTIRGSEEVYIHPSSVLFRVNPKWVVYQSIV
STERQYMRNVVTINPSWLTEVAPHFYQNRQNAISF
NT seq 2088 nt   +upstreamnt  +downstreamnt
atggcgttttggaaaccagggactgagaaacgtcgtttcgaagatgatggagaaggaggt
atagtgttcatgtccaacaatctcgcatcctcgtcttcttctagtaatgggtatgcgaat
atagagaagcaaagacagagattgccagtgtacaagtacagaactgagattctctatttg
gtggagaatcacgctaccaccattatcgttggcgagacgggcagtggtaaaaccactcag
attcctcagtacctgaaagaagctggatgggctgaaggaggccgagttattgcttgcaca
cagccaagacgtttagctgtccaggcggtttctgcaagagtggctgaagagatgggagta
aatcttgggaatgaagttggctacacaattcgatttgaagatcagacaacttccggtgtg
actagtgtaaaatttctcacagatggggttttaatccgagagatgatggaagatcctctc
ttgtcaaagtatagtgttattatgatagatgaagctcatgagagatctatttcaactgac
attttactgggtctcttaaagaagatacaacgtcgccgtcctgagctacgcctgattata
tcgtccgccacaatcgaagcaaaagccatgttcaatttcttcaattccagcaaaaaacgc
catgcgccagaaggtagtgcccagggaccaaagttggaacctgcaatcttatctttcgag
ggcagaggcttcagtgtgaaaattcactatgttgaggagcctgtctcagattatattcga
tcagttgtttcaacgatattattgataaatgagcgggagccacctggggatgttcttgta
tttcttactggtcaagaagatattgaaactgcaattaaacttcttgaagaagaagctcat
agcaatcaaaagaattcttcaggactgctacctctgccactatattcaggactttctcga
tcagatcaggaattgatcttttctccaactcccagaggaaagagaaaagttatactctca
acaaatattgcagaaacatcattgactctggagggtgttgtctatgtgattgatagtggt
ttctcgaagcaaaagttctataacccaatttcagatatcgaaagtcttgtggtggcacca
atatccaaagcatctgctagacaaaggtctggtagggctgggcgagtccgacctgggaag
tgttacaggctttacactgaagattattttctcaaccaaatgcctggagaaggcataccg
gaaatgcagaggtcgaatcttgtctctactgtaatacagctaaaggctttgggcatagat
aatatattgggttttgattggccttcacctccatccccacaagcaatgatccgggcactt
gaagtactctattcacttcagatccttgatgatgatgcaaaactcacatcgccaacagga
ttccaagttgcagaacttccactggacccaatgatatcaaaaatgattttagcttcaagt
gagcttggttgtacagatgagatcattacaatcgctgcagttctctctatccaatccgtt
tgggtcattgctaggggagtacagaaagaacaggatgaagccaaactgagatttgcagct
gcagagggtgaccatgtcacattcctgaatgtatacaaagggtttcttgagtcgaaaaag
tcttcacagtggtgtgccaagaacttcctcaactaccaatccatgaaaaaagtggttgaa
atcagggatcaactcaaacggattgctcggagattaggcgtcaccctgaaatcatgtgac
ggagacatggaggctgtgcgaaaagctgtgactgcagggtttttcgctaatgcatgccgc
ttagaaccacatagcaatggggtatttaagaccattagaggctctgaagaagtttatatt
cacccgtcatccgtattattcagggtgaatccgaaatgggtggtttaccaatccattgtc
tcaacagagcgtcaatatatgcggaatgtcgtaactatcaatccatcttggctgactgaa
gttgctccacacttttaccagaaccggcaaaacgctatctccttctag

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (15)   
   Pfam (15)   
All databases (27)   

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