KEGG T02461: CSSP291

Cronobacter sakazakii Sp291: CSSP291_16505

Entry

CSSP291_16505     CDS       T02461

Name

(GenBank) ATP-dependent RNA helicase DeaD

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

csz Cronobacter sakazakii Sp291

Pathway

csz03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:csz00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CSSP291_16505
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csz03019]
    CSSP291_16505
   03009 Ribosome biogenesis [BR:csz03009]
    CSSP291_16505
Enzymes [BR:csz01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CSSP291_16505
Messenger RNA biogenesis [BR:csz03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CSSP291_16505
Ribosome biogenesis [BR:csz03009]
Prokaryotic type
  rRNA helicases
   CSSP291_16505

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA DeaD_C ResIII CMS1 DRTGG AAA_22 Flavi_DEAD

Other DBs

NCBI-ProteinID:

AGE87870

Position

complement(3497365..3499272)

AA seq 635 aa
MAEFETTFTDLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLHNIDETLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAE
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLTKLQPEGELDVET
LAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRNGEDRPRRE
RRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPT
EVLQHFTRTRILNKPMNMQLMGDAQPRGDRRPGGGGRGFGGERREGGRGEGRGEGRRFSG
ERREGGRSFGGDRREGGRSPRRDDAATPRRRFGDA

NT seq 1908 nt +upstreamnt +downstreamnt
atggctgaattcgaaaccacttttactgatctgggcctgaaggctccaatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaatccaggcagaatgtattccgcatctg
ctgggtggtcgcgacgttctgggtatggcccagaccggtagcggcaaaaccgcagcgttc
tcactgccgctgctccacaacattgatgaaactctgcgcgcgccgcagattctggttctg
gctccgacccgcgaactggcggttcaggttgctgaagccatgaccgatttctctaaacat
atgcatggcgtaaacgtcgtggccctgtatggcggccagcgttatgacgtgcagctgcgc
gcactgcgccagggtccgcagattgtggtcggtacgccgggccgtctgctggatcacctc
aagcgcggtacgctggatctttctaacctgaaaggcctggtactggacgaagcagacgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggctgaa
catcagaccgcgctcttctccgcgaccatgccggaagcgattcgtcgcatcacccgtcgc
tttatgaaagagccgcaggaagtgcgcatccagtccagcgtcaccactcgcccggacatc
agccagagctactggtctgtgtacggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgacgcggcgattatcttcgtgcgcaccaaaaacgcgaccctggaa
gtggctgaagcgctggagcgcagcggctacaacagcgccgcgctgaacggtgacatgaac
caggccctgcgcgagcagacgctggagcgtctgaaagacggccgtctggatatcctgatc
gcaaccgacgttgcggcgcgtggtctggacgttgagcgtatcagccttgtggtgaactac
gacatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggc
cgtgcaggtcgtgcgctgctgttcgttgagaaccgtgagcgtcgtctgctgcgtaacatt
gaacgcaccatgaagctgaccattccggaagtagagctgccgaacgcagaactgctgggc
aaacgccgtctggaaaaattcgccgcgaaagtccagcagcagctggaaagcagcgatctg
gaccagtaccgtgcgctgctgaccaagcttcagccggaaggcgagctggatgtggaaacg
ctggctgctgcgctgctgaaaatggcgcagggcgaacgtccgctgatcctgccgccggat
gcgccgatgcgtccgaagcgtgaattccgcgatcgcgatgaccgtttcgagcgccgtggc
gaccgtaacgatcgtggcccgcgtggcgaccgcaacggtgaagaccgtccgcgtcgcgag
cgtcgtgacgctggcgatatggaactgtaccgcatcgaagtgggtcgtgatgatggcgtc
gaagtgcgtcacatcgtgggcgctatcgccaacgaaggcgatatcagcagccgttacatt
ggtaacatcaagctgttcgcgtctcactccaccattgagctgccgaaaggcatgccgacc
gaagtgctgcagcacttcacccgtacgcgtattctgaacaagccgatgaatatgcaactg
atgggtgatgcacagccgcgcggcgatcgtcgtcctggcggcggtggtcgtggtttcggt
ggcgaacgccgtgaaggcggtcgcggtgaaggccgtggcgaaggtcgtcgtttcagcggc
gaacgtcgcgaaggcggtcgtagcttcggcggcgatcgtcgtgaaggcggccgcagcccg
cgtcgtgatgacgcagcgaccccgcgccgtcgtttcggcgacgcataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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