KEGG   Chlorella variabilis: CHLNCDRAFT_137613
Entry
CHLNCDRAFT_137613 CDS       T02924                                 
Name
(RefSeq) hypothetical protein
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
cvr  Chlorella variabilis
Pathway
cvr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHLNCDRAFT_137613
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cvr03041]
    CHLNCDRAFT_137613
Enzymes [BR:cvr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CHLNCDRAFT_137613
Spliceosome [BR:cvr03041]
 Complex C
  Other components
   Step II factors
    CHLNCDRAFT_137613
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N S1 Helicase_C AAA_22 nSTAND3 AAA_19 NB-ARC AAA_30 ABC_tran TsaE AAA_16 Sigma54_activ_2 PhoH DEAD T2SSE Transformer
Other DBs
NCBI-GeneID: 17358781
NCBI-ProteinID: XP_005851088
JGI: ChlNC64A_1_137613
UniProt: E1Z436
Position
Unknown
AA seq 1006 aa
MEQLAKLQYLSLVSKITTELENHLGIADKTLSEFIVELSKGKASVKEFRLALRENGADMP
DSLVETLWAIIQRMLPGGKPGGKPGGGGAGPSGLQPRPDAPFAGLAMPDTRDRVKQMEEE
MLAEARAKAEADTGAERQRSHEQASTRNGREADGRGRGGREERNRDGPRYRSRSRSPGGG
GRRRRSRSRSRERYRRRSPSPRGGGGRREEPLPDEPEMYGVYRGRVTGVMDFGCFVELQG
FRTKQEGLVHLSNISSTKRAGSAKDMVGKGDPVWVKIVSKTGQRLGLAMRDVDQVTGEDL
LPMQRGAAPTGASNPAGPLSLANQTALHGLSGIKVKEDEVLEGKPKRRGKVMSDYEKWEI
KQLINSGVLDPSEYPGFDEEEGGALASVDAEVEEEFEIDLNDNEPDFLRGQTQKTGVEMS
PIKIVKNPDGSMQRAAMTQSALAKERRELREQQNRMLIEAIPKDLSKPWEDPMADASERA
LAQELRGIGVGVQEVPEWKQQALGKAPTFGIRDNRSIKDQRESLPIYKLREQLVQAVHDN
QVLVVIGETGSGKTTQMTQYLAESGYTSKGKIGCTQPRRVAAMSVAKRVSEEVGCRLGEE
VGYAIRFEDCTSQQTVIKYMTDGMLLREALLDDMLSQEEIDTSAQILFERMKSLGPAVPE
LIILPVYSALPSEMQTRIFEPAPPGTRKVVIATNIAEASLTIDGIYYVVDPGFAKQKVFN
PKRSNLSMTVLTMKAMGINDLLNFDFMDPPPPQTLISALEQLYNLGALDEEGLLTRLGRK
MAEFPLDPPVSKMLIASVDLGCSEEVLTIIGMLSAQNIFYRPKEKQAQADQKKAKFHQPE
GDHLTLLAVYEGWKNSKFSNPWCYEAFVQARSLRRAQDVRKQLVAIMDRYKLDLVSAGRS
YQKIQKAICSGFFFHAARKDAQEGYKTVVEQQPVFIHPSSALFQHQPQWVVYHELVLTTK
EYMREVCEIDPKWLVEMAPRFFRAADPHKLSRRKRHERIEPLKRRG
NT seq 3021 nt   +upstreamnt  +downstreamnt
atggagcagctggcgaagctgcagtacctgtcgctggtcagcaagatcaccacagagctc
gagaaccacttgggcattgcggacaagaccctgtctgagtttatcgtcgagctgagcaag
ggcaaggcgagcgtcaaggagttccggcttgcgctgcgcgagaatggcgccgacatgccc
gactcgctcgttgagactctgtgggccatcatccagcgcatgctgcccggcggcaagccc
ggcggcaagcccggcggcggcggggcggggccctcgggcctgcagccgcggccggatgca
ccgtttgcgggccttgcgatgcccgacactcgggaccgagtgaagcagatggaagaagag
atgctggcggaggctcgggccaaggcagaggcggatacaggggcagagcgtcagcgcagc
cacgagcaggcgtcgacgcgcaacgggcgggaggcggacggccggggccggggggggcgg
gaggagcggaaccgcgatggcccgcggtatcgcagcaggagccgcagccccggcggcggc
ggcaggcgccggcgcagccgcagcaggtcgagggagcggtatcggcgacgcagccccagc
ccgcgcggcggcggcggccgccgcgaggagccgctgccggatgagcctgagatgtatggc
gtgtaccggggccgtgtgacgggtgtcatggactttggctgctttgtggagctgcaaggg
ttccgcaccaagcaggaggggctggtgcacctgtccaatatctcctccaccaagcgggca
ggcagcgccaaggacatggtgggcaaaggcgaccccgtctgggtcaagattgtgtccaag
acgggccagcggctggggctggcgatgcgggatgtggatcaagtcacaggggaggacctg
ctgcccatgcagcgcggcgcggcccccaccggcgcctccaaccccgcgggcccgctcagc
ctggccaaccagaccgcgctgcacgggctgtcggggatcaaggtcaaggaggatgaggtg
ctggagggcaagcccaagcggcgcggcaaggtgatgagcgactacgagaagtgggagatc
aagcagctgatcaactcgggcgtgctggatcccagcgagtatcccggcttcgatgaggag
gagggcggcgcgctggcaagcgtggatgctgaggtggaggaggagtttgagatcgacctg
aacgacaacgagcccgacttcctgcggggccagacccagaagacgggggtggagatgagc
cccatcaagattgtgaagaacccagacggctccatgcagcgcgccgccatgacgcagagc
gctctggccaaggagcggcgggagctgcgggagcagcagaaccgcatgctgatcgaggcc
atccccaaggacctctccaagccctgggaggatcccatggcggacgccagcgagcgtgcg
ctggcgcaggagctgcgcggcatcggtgtgggggtgcaggaggtgccggagtggaagcag
caggcgctgggcaaggcgcccacctttggcatccgcgacaaccgctccatcaaggaccag
cgcgagtcgctgcccatctataagctgagggagcagctggtgcaggcggtgcacgacaac
caggttctggtggtgattggggagacggggtcaggcaagaccacccagatgacgcagtac
ctggcggagtcggggtacaccagcaagggcaagattggttgcacgcagcccaggcgtgtg
gccgccatgtctgtcgccaagcgcgtgtcggaggaagtggggtgccgcctgggagaggag
gtgggctacgccatccgcttcgaggactgcaccagccagcagacggtgatcaagtacatg
actgacggcatgctgctgcgggaggcgctcctggacgacatgctcagccaggaggagatt
gacaccagcgcccagatcctttttgagcgcatgaagtcgctgggacccgcggtgcccgag
ctcatcatcctgcccgtctactcggcgctgccctcggagatgcagacccgcatcttcgag
cccgccccgcccggcacccgcaaggtggtcatcgccaccaacatcgccgaggcctccctc
accatcgacggcatctactacgtggtggaccccggcttcgccaagcagaaggtgttcaac
ccaaagcgctccaacctgtccatgacggtgctgaccatgaaggcgatgggcatcaacgac
ctgctcaacttcgacttcatggacccgccgccgccgcagaccctcatctccgccctggag
cagctgtacaacctgggagcgctggacgaggaggggctgctgacgcggctgggccgcaag
atggcggagttcccgctggacccgcccgtcagcaagatgctgatcgccagcgtggacctg
gggtgcagcgaggaggtgctgaccatcatcggcatgctctccgcgcaaaacatcttctac
cggcccaaggagaagcaggcgcaggctgaccagaagaaggccaagttccaccagcccgag
ggcgaccacctcacgctgctggcggtctacgagggctggaagaactccaagttctccaac
ccctggtgctacgaggcctttgtgcaggcgcggtcgctgcggcgggcgcaggatgtgcgc
aagcagctggtggccatcatggatcgctacaagctcgacctggtgtcagccgggcgcagc
taccagaagatccagaaggccatctgctccggcttcttcttccacgccgcccgcaaggac
gcgcaggagggctacaagacggtggtggagcagcagcccgtgttcatccaccccagctcc
gccctcttccagcaccagccgcagtgggtggtgtaccacgagctggtgctgacaacaaag
gagtacatgcgagaggtgtgcgagatcgaccccaagtggctggtggagatggcgccgcgc
ttcttccgcgccgctgacccgcacaagctctcgaggcgcaagcggcacgagcgcatcgag
ccccttaaacggcgcggctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (123)   
   KEGG ORTHOLOGY (1)   
   RefGene (118)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (18)   
   Pfam (18)   
All databases (150)   

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