KEGG   Rippkaea orientalis PCC 8802: Cyan8802_4337
Entry
Cyan8802_4337     CDS       T00968                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
cyh  Rippkaea orientalis PCC 8802
Pathway
cyh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cyh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Cyan8802_4337
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cyh03019]
    Cyan8802_4337
   03009 Ribosome biogenesis [BR:cyh03009]
    Cyan8802_4337
Enzymes [BR:cyh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Cyan8802_4337
Messenger RNA biogenesis [BR:cyh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Cyan8802_4337
Ribosome biogenesis [BR:cyh03009]
 Prokaryotic type
  rRNA helicases
   Cyan8802_4337
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 DUF4404
Other DBs
NCBI-ProteinID: ACV03123
Position
4485764..4487221
AA seq 485 aa
MTISFQSLGLSETRANQLEAIGFTSPTEIQQKAIPLLLEGHDILGQSQTGTGKTAAYSLP
ILEQVDVKNPNVQALILTPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLER
GVQIVVGTPGRVIDLLDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKILKQTPDTRSTA
CFSATMPREIRELVNQFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKALQPILELE
APESAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVVATD
IAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQIERK
LRQQLEICQIPSRSQVESKRLEKLQRQIQESLAGERMASFLPIVRELSAEYDPQAIAAAA
LQMVYDQDCPNWMKTDWEVPEASVPKPVIKRKPSPNNNGGKYNRRSQAPQRSGGSDRKVV
THNHN
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgaccatttctttccaaagcttaggactctctgaaacccgcgccaaccaattagaagcg
atcggctttaccagtcctactgaaattcaacaaaaagccattcctttacttttagaaggc
catgatattttaggtcaatcccaaacaggaacgggaaaaactgcagcctattcgttacct
attcttgaacaagttgatgtcaaaaatcccaacgtacaagcccttattttaacccccacc
cgcgagttagcccaacaagtagccctcgccctcaaagatttctccactgaacgccgactc
tacatcttaacggtttatggtggtcaatccattgaaagacaaatccgcagtttagaacgg
ggtgtgcaaattgttgttggaacccccggacgggttatcgatctattagaccgcaaaaaa
ctcagcttcgagggcttacgttgggcagtccttgatgaagccgatgaaatgctgagtatg
ggctttatcgacgatgtgaagaagatcctcaaacaaacccccgacacccgtagtacggct
tgtttttctgccaccatgccccgcgaaattcgggaattggtcaaccagttcctcaaatct
cccgttaccgttgcagtagaacagccccaggcagccccatcaaaaattgagcagcatctt
tataacgttccccgtggttggtcaaaacttaaagccctacagcctattttagaacttgaa
gcccccgaatcagccattatttttgttcggacaaaacagacggcggcggaattaacctgc
aagttacaagaagccgggcagagtgtggatgaatatcacggcaatttgagtcaatctcaa
cgggaacgcctagtttatcgcttccgtgaaggcaaaattaagctggtggtagcaacggat
attgcagcgcgggggttagacgtggaaaatttaagccacgtcattaactacgacttaccc
gataatgcagaaacctatattcaccgcattggacggactggacgcgcgggtaaaacggga
acggcgatctctttggtggaaccgattgatcgtcgcatgatcaagcaaattgaacgtaaa
ttacgccagcaactggaaatttgtcagattcctagtcgttcccaagtggagtcgaagcga
cttgaaaaattacaacgccagattcaagaatccttagccggagaacggatggcttctttc
ttgcccatcgtccgagaattgagtgcggaatatgatcctcaagcgatcgcagccgcagcc
cttcagatggtttacgatcaagattgtcccaactggatgaaaactgactgggaagtgcct
gaagcaagcgtacccaaacccgttattaagcgcaaaccgtctcctaataataatggtggt
aaatacaaccgtcgcagtcaagctcctcaacggtctggtggttctgatcgcaaggtagtc
acccataatcacaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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