KEGG   Cavenderia fasciculata (cellular slime mold): DFA_04265
Entry
DFA_04265         CDS       T02668                                 
Symbol
uap56
Name
(RefSeq) DEAD/DEAH box helicase
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
dfa  Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03013  Nucleocytoplasmic transport
dfa03015  mRNA surveillance pathway
dfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DFA_04265 (uap56)
  09122 Translation
   03013 Nucleocytoplasmic transport
    DFA_04265 (uap56)
   03015 mRNA surveillance pathway
    DFA_04265 (uap56)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dfa03019]
    DFA_04265 (uap56)
   03041 Spliceosome [BR:dfa03041]
    DFA_04265 (uap56)
Enzymes [BR:dfa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     DFA_04265 (uap56)
Messenger RNA biogenesis [BR:dfa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     DFA_04265 (uap56)
Spliceosome [BR:dfa03041]
 Complex C
  Other components
   EJC/TREX
    DFA_04265 (uap56)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    DFA_04265 (uap56)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 P-loop_SecA
Other DBs
NCBI-GeneID: 14874540
NCBI-ProteinID: XP_004359998
UniProt: F4PP34
Position
Unknown
AA seq 426 aa
MADPDVDINELAEYEESDPEDNVQETNGGSKNVSAKDTHVAMHSSGFREFLLKPELERVI
GDCGFEHPSEVQNECIPQAILGHDVICQAKSGMGKTAVFVLSLLQQIDKNPSGVVALVLC
HTRELAYQICDEFDRFVKYMPQVKTAVIYGGIPINTQKELLRDKQPNIVIGTPGRVLALA
TDKSLSLKNVKHFVLDECDSLLEALDMRKDVQKIFKATPASKQVMMFSATLSESIRSVCK
KFMNHPFEIYINDGSKLTLHGLQQYFIKLNEDQKNKKLVDLLDGLDFNQIVIFVKSVERA
KLLNQILSDVGFSSICIHRGLDQPERIEQYRKFKNFQSRVMVATNIFGRGIDIERVNVVI
NYDMAESPDTYLHRVGRAGRFGTKGLAISFITSPDDQTTLDTVQSKFVVSVKDLPDTIDP
STYMSG
NT seq 1281 nt   +upstreamnt  +downstreamnt
atggccgacccagatgttgatatcaacgagcttgccgaatacgaagagagtgatccagaa
gacaacgtacaagaaaccaacgggggttccaagaatgtctctgcaaaggatacccatgtt
gccatgcacagcagtggttttagagagttcctcttaaagccagagttggaaagagttatt
ggagattgtggttttgaacatccatccgaagttcaaaatgaatgtattccacaggccatc
ctcggtcacgatgtcatctgtcaagccaagtctggtatgggtaagactgccgtctttgtt
ttgtctcttcttcaacaaattgacaagaatccatctggcgttgttgctcttgttttatgt
catactagagagcttgcctatcaaatttgtgatgaatttgatagatttgtcaagtatatg
ccacaagtcaagactgccgtcatctatggtggtatcccaatcaacacccaaaaggaactc
ctcagagacaagcaaccaaatattgttatcggtactccaggtcgtgtcctcgcacttgcc
actgacaagtcactcagtctcaagaacgtcaagcactttgtacttgatgaatgtgacagt
ttgttggaagctttagacatgagaaaggatgtccaaaagatcttcaaggctaccccagcc
tccaagcaagtaatgatgttttctgctactcttagtgaaagcattcgttcagtttgcaag
aaatttatgaatcatccatttgaaatttatatcaatgatggtagtaaattaactttacat
ggtctccaacaatactttatcaaactcaatgaagaccaaaagaacaaaaagttggtcgat
ttgttggatggtttagatttcaaccaaatcgtcattttcgtaaagagcgtagagcgtgct
aaattactcaaccaaattctctctgacgtcggtttctcttcgatctgtattcatcgtgga
ttagatcaaccagaaagaattgaacaataccgtaaatttaagaacttccaatctcgtgtc
atggttgccaccaacatctttggtagaggtattgatattgaacgtgtcaatgtcgtcatc
aactatgatatggccgaatcaccagatacttacctccatcgtgtcggtcgtgccggtcgt
ttcggtaccaagggtcttgccatttctttcatcacctcgccagatgaccaaaccactctt
gacactgtccaatccaagtttgtcgtctctgtcaaggatctcccagataccattgatcca
tctacttatatgagtggttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (71)   

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