KEGG   Desulfovibrio fairfieldensis: AXF13_12810
Entry
AXF13_12810       CDS       T04293                                 
Name
(GenBank) DNA helicase UvrD
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
dfi  Desulfovibrio fairfieldensis
Pathway
dfi03420  Nucleotide excision repair
dfi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dfi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AXF13_12810
   03430 Mismatch repair
    AXF13_12810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dfi03400]
    AXF13_12810
Enzymes [BR:dfi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AXF13_12810
DNA repair and recombination proteins [BR:dfi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AXF13_12810
   MMR (mismatch excision repair)
    Other MMR factors
     AXF13_12810
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 Viral_helicase1 AAA_12 DEAD
Other DBs
NCBI-ProteinID: AMD90936
UniProt: A0A120KMH4
Position
3035499..3037799
AA seq 766 aa
MIDYAQALNEAQYAAATSGDGPVLVVAGAGSGKTRTIVYRLAWLAEHGVAPTSILLLTFT
RKAAQEMLQRAGMLLDQGLSGVQGGTFHAFAYGVLRRWRPAWLGERPFTVMDSADITAAV
KYCKDELKLGRGDRSFPKTQSIVGLLSKARNKELSLEEVLRREAFHLLPHTEALAALGEA
YTAYRREKGLLDYDDLLFELETLLRENQAAAEALRLRFSHILVDEYQDTNLVQARIVRLL
AGPPDKDANGGETTSITGNVMAVGDEAQSIYAFRGANVRNILDFPKLFPGTRIIRLEENY
RSTKPVLDVANSLLAHAAESFRKTLFTRKEGGDPVRLVTPLSDMSQAKLVVRRIEELLDT
HLPHEIAVLFRAGFHSYNLEMALNQTGIPFRKYGGLRYTEAAHVKDVIAYARLVLNPLDL
PAFARVAALHSGIGPKTVQKLYAVALGGDAKAVEKAFARHPDLLEDMRFVDDLRARPQSP
AALFGAVLEHYRPRLESTYPEDWPRRQQGLEEIIQMAAGYSELDLFVADLALESPEEDEN
DGEGRITLSTVHSAKGLEWNAVLIIDLVEDRFPSRHALARPEDFEEERRLMYVACTRARQ
DLELYAPAAIYSRAERGSLHVSQSPFVRELSPGLTEEWVEGFGGILSRRGSCFSGVGGVR
GRLLPPARQAVPAFPGPAGEGTAFDDCQLLPESGSVSSFQAEVQDSADDATSPTASTSGT
ARLCHCRHRIFGRGKIIKHLPPDKVQVNFPGFGLKVILTEYLLMEN
NT seq 2301 nt   +upstreamnt  +downstreamnt
atgattgattacgcccaggccctcaacgaagcccagtacgcggcggccaccagcggcgac
ggtcccgtgctggtcgtggcaggcgcgggcagcggcaaaacccgcaccatcgtctaccgc
ctggcctggctggccgagcacggcgtcgcgcccacgtccatcctgctgctgaccttcacc
cgcaaggccgcgcaagagatgctccagcgcgcgggcatgcttctggaccagggcctttcc
ggcgttcagggcggcaccttccacgccttcgcctacggcgtgctgcgccgctggcgcccc
gcctggctgggcgaacggcccttcacggtcatggattcggcggacatcacggcggcggtc
aaatactgcaaggacgagctcaagttgggccggggcgaccgctccttccccaagacccag
agcatcgtgggcctgctgagcaaagcccggaacaaggaattgtccctggaagaagtgctg
cggcgcgaagccttccaccttctgccccacaccgaagccctcgcggctctgggcgaagcc
tataccgcctaccgccgcgaaaagggcctgctggactacgacgacctgctctttgagctg
gaaaccctgctgcgcgaaaaccaggccgccgccgaagccctgcgcctgcgcttcagccat
atcctggtggacgaataccaggacaccaatctggtccaggcccgcattgtgcgcctgctg
gccgggccgcccgacaaggatgcgaacggcggggaaaccacatccataaccggcaacgtc
atggccgtgggcgacgaagcccagtccatctatgcctttcgcggggccaatgtccgcaat
attctggatttccccaaactttttccgggcacgcgcatcatccgcctggaggagaattac
cgctccaccaagcccgtgctggacgtggccaacagccttttggcccacgcggcggaatcc
ttccggaagaccctgttcacccgcaaggaaggcggcgacccggtgcgcctggtcacgccg
ctcagcgacatgagccaggccaagctggtggtgcgccgcatcgaggaactgctggacacg
catctgccccacgaaatcgcggtgctcttccgcgcgggcttccattcctacaacctggaa
atggccctgaaccagacgggcattcccttccgcaaatacggcggcctgcgctataccgag
gccgcgcacgtcaaggacgtcatcgcctacgcccgtctggtgctcaaccccctggacctg
cccgccttcgcgcgggtggcggcactgcacagcggcatcggccccaagacagtgcagaag
ctctatgccgtggccttgggcggggacgccaaagccgtggaaaaggcctttgcccgccat
ccggatctgctggaagacatgcgcttcgtggacgacctgcgcgcccggccgcagagcccg
gcggccctgttcggggccgtgttggagcactaccggccccggctggaaagcacctacccc
gaagactggccccgccgccagcagggcctggaggaaatcatccagatggccgccgggtac
agcgagctggacctctttgtggcggatctggccctggagtcgccggaagaggacgaaaac
gacggcgaggggcgcatcaccttgtccaccgtgcattcggccaagggcctggaatggaac
gccgtgctgatcatcgatctggtggaggaccgctttccctcccgccacgccctggcccgg
cccgaggattttgaggaggagcgccgcctgatgtacgtggcctgcacccgcgcccgccag
gatctggaactgtacgccccggcggccatctacagccgggccgagcgcggcagcctgcac
gtcagccagagcccctttgtgcgcgagctgtcccccggcctgaccgaagaatgggtggaa
ggcttcggcgggatactcagccgccgcggaagctgcttttccggcgtgggcggcgtgcgc
ggccgtttgctgccccccgcgcgtcaggcggttcccgcctttcccggcccagccggagaa
ggcacggcctttgacgactgccagctcctgcctgaaagcggctccgtgtcgtcgtttcag
gccgaggttcaggatagcgcggatgacgcaacatctcccaccgcttccacgtccggcacg
gcccggctctgccactgccgccaccgcattttcggccggggcaagatcatcaaacacttg
cctccggacaaggtgcaggtgaattttcccggtttcgggctgaaagtcattctgaccgaa
tatctgctcatggagaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system