KEGG   Dokdonia sp. MED134: MED134_04049
Entry
MED134_04049      CDS       T03275                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
  KO
K03702  excinuclease ABC subunit B
Organism
dok  Dokdonia sp. MED134
Pathway
dok03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dok00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    MED134_04049 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dok03400]
    MED134_04049 (uvrB)
DNA repair and recombination proteins [BR:dok03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MED134_04049 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      MED134_04049 (uvrB)
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD AAA_30 AAA_22 DUF87
Other DBs
NCBI-ProteinID: EAQ38455
Position
748711..750711
AA seq 666 aa
MKFKLQSDFKPTGDQPSAIKQLVDGINKNETYQTLLGVTGSGKTFTVANVIQETEKPTLI
LAHNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAFIPSSGVYIEKDLSINEEIEKM
RLSTTTSLLSGRRDVIVVASVSCLYGIGNPAEFEKNITEIKQDQVMARTMFLKKLVQGLY
SRTEGEFNRGNFRIKGDTVEVFPGYADMAFRVHFFGDEIEEIEAFDPASAEVIEKYSRLR
IYPANMFVTSQDVLQGAINQIGEDLTKQVSFFEEVGKHLEAKRLDERTNFDLEMIRELGY
CSGIENYSRYLDGREPGTRPFCLLDFFPDDYLMVVDESHVTVSQVSAMYGGDRSRKENLV
EYGFRLPAAMDNRPLKFEEWEMMQNQVIYVSATPADYELQKSEGTYVEQIIRPTGLLDPI
VEVRPSLNQIDDLIEEINKVTERNERVLVTTLTKRMAEELTKYLTRIDIRTRYIHSDVDT
LERVELMQDLRKGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRA
ARNVNGKAIMYADKITKSMQETIDDSNYRRQKQIDYNNKNGLTPMAIKKSLDNALTRKET
YKIEAEELVNLAAEDAEEYLTKPQIEKKIRSTRKAMEAAAKELDFMQAAKLRDQIKVYQE
QIKELA
NT seq 2001 nt   +upstreamnt  +downstreamnt
ttgaaatttaaactacaatctgactttaaacctactggtgatcaaccctctgcaatcaaa
caactagtagacggtatcaataaaaatgaaacctaccagacactactaggtgttaccgga
agtggtaaaacatttacggtcgcaaatgtgatacaagagacagaaaaacccacactcata
ctcgctcataataaaacactcgcagcgcaattatacagcgagtttaaagcattttttcca
gataatgcggtagagtattttgtatcgtattatgactattaccagccagaagcctttatt
ccttcttctggagtgtatatagagaaagatctttctatcaatgaagagatagaaaaaatg
cgactaagcaccaccacttccctactctctgggcgtcgcgatgttattgtggttgcatct
gtatcgtgcttatatggtataggtaacccagccgagtttgagaaaaacataacagaaatc
aagcaagaccaagttatggcacgcacgatgtttcttaaaaaactcgtgcaaggactctac
tcacgtacagagggagagtttaatcgtggtaattttagaataaagggagacacggtagag
gtgttcccgggatatgcagatatggcttttagagttcacttttttggtgatgagatagaa
gaaatagaagcctttgacccagcatctgcagaggtgattgagaagtattctcgcttgcgc
atctatcctgcaaatatgtttgtaacctctcaagatgtactacaaggagccataaatcaa
ataggtgaggatcttactaaacaggtaagcttttttgaagaagtaggtaaacacctagaa
gcaaaaagactagacgaacgcacaaattttgacttagaaatgatacgagagctaggctat
tgctctggtattgaaaattactcaagatatctagacggtcgcgagccaggcacaagacct
ttctgtctactagatttctttccagatgactacttgatggtagtagatgagagtcacgtg
acggtctcgcaagtaagtgcgatgtatggaggtgatagaagtcgtaaggaaaacctggta
gaatacggttttagactacccgccgcgatggataatcgcccacttaaatttgaagagtgg
gaaatgatgcaaaatcaagttatatatgtttcggctaccccagcagactatgagttacaa
aagtctgaaggaacttatgttgagcaaattatacgtcctacgggtcttttagaccctata
gtagaagtacgcccatctctcaaccagatagatgatcttatagaagaaataaacaaagtc
acagagcgcaatgagcgcgtgcttgtcaccacgcttactaagcgtatggcagaagagctt
acaaaatacctcacccgtatagacatacgtacccgctacatacactctgatgtagataca
cttgagcgtgtagaattaatgcaagatttacgtaaaggcgtttatgatgtacttgtgggt
gttaacctacttagagaaggtctagatttaccagaagtatcactggtagctatacttgat
gcagataaggaaggttttttacgtagtaacaggtcacttacccaaactatagggcgtgcc
gcacgtaacgtaaatggtaaagctattatgtatgcagataagattacaaagtctatgcaa
gaaaccatagacgatagtaactaccgtcgccagaagcaaatagactataataacaagaat
ggcctcactcctatggctattaaaaagagtcttgacaatgcgcttacgcgaaaagaaact
tacaaaattgaagccgaagagctcgtaaatctcgctgccgaagatgcagaagagtatctt
actaagccacaaatagagaagaaaatacgaagcactagaaaggcaatggaagctgctgcc
aaagagctagactttatgcaggctgcaaaacttagagaccagattaaagtataccaagag
caaattaaggagctagcataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (16)   

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