KEGG   Durio zibethinus (durian): 111280266
Entry
111280266         CDS       T05242                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
dzi  Durio zibethinus (durian)
Pathway
dzi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dzi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111280266
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dzi03019]
    111280266
   03041 Spliceosome [BR:dzi03041]
    111280266
   03009 Ribosome biogenesis [BR:dzi03009]
    111280266
   03016 Transfer RNA biogenesis [BR:dzi03016]
    111280266
Enzymes [BR:dzi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     111280266
Messenger RNA biogenesis [BR:dzi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     111280266
Spliceosome [BR:dzi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    111280266
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    111280266
Ribosome biogenesis [BR:dzi03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    111280266
Transfer RNA biogenesis [BR:dzi03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    111280266
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk ResIII Helicase_C Zot ATPase_2 nSTAND3
Other DBs
NCBI-GeneID: 111280266
NCBI-ProteinID: XP_022723216
UniProt: A0A6P5X5T9
Position
Unknown
AA seq 989 aa
MGSLKRKWGEEASSDSPQQKKKQQSGDGSLLVEEAVGCVHDVSYPEGYVPSTSSTELPKD
CKPAKEFPFTLDPFQSEAINCLDNGQSVMVSAHTSAGKTVVALYAIAMSLRNNQRVIYTS
PIKALSNQKYREFKQEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEIVREVAWI
VFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVYT
DYRPTPLQHYIFPAGGDGLFLVVDEKGKFREDSFQKALNALVPTSESDRKKDNGKSKKGL
LMGKVNEQSDIFKLVKMIIQRQYDPVIIFSFSKRECEFLAMQMARMDLNDDDEKGNIEII
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDARGICILMVDERM
EPSTAKMMLKGNADSLNSAFHLSYNMLLNQLRCEDADPESMLRNSFYQFQADRAIPDLEK
QVKALEEERDSMIIEEEDSLKNYYNLIQQYKSLKNDIRDIVYSPKYCLPYMKSGRPVCIK
CIDDEKSPSFSIEDHATWGVLMDFHRVKSAIEDDASRRPEDASYALDILTRCAVSKDGLG
KKQIKIVPLKEPGEPLVVSVPLSQVTSLSSARLNIPKDLLPLEARENALKKLSEFISRYA
NGMPLDPEEMNIQSNSYKKAVRRLEALENLFEKHEIAKSPLIEQKLKLLNRKEELTAKVR
SIKKTMRSSTVLAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSADELTLTELMF
SGVLKDVKAEEMVSLLSCFVWQERLQDAAKPREELELLFTQLQDTARRIAKAQLECKVQI
DVESFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAAKS
IGETELESKFEEAVSKIKRDIVFAASLYL
NT seq 2970 nt   +upstreamnt  +downstreamnt
atgggatcgctgaaaaggaagtggggtgaggaggcatcctcggactctcctcagcagaag
aagaaacaacagagtggagatggctcattgttggtggaggaagccgtaggttgtgtgcat
gatgtttcatatccagaaggttatgttccttccacttcctcaacagaacttccaaaagac
tgtaaacctgccaaggaatttcccttcactcttgacccttttcagtctgaagctatcaac
tgcctcgataatggccaatctgtcatggtatcagcacatacatcagcagggaaaactgta
gtagctctatatgcaattgctatgtctttgcggaataatcagcgggttatatatacttca
cctattaaggctctcagcaaccagaagtatagggagtttaaacaagagttttccgatgtg
ggtttgatgactggagacgttacaattgaccctaatgcttcttgcttggtgatgactacg
gaaatctggcgtagtatgcagtataaagggtcagagattgttagagaggtggcatggatt
gtttttgatgaagttcattacatgcgtgatcgtgagagaggtgtggtatgggaagagagc
attgttatggcaccaaagaactctcggtttgtatttctttcagcaactgtgcctaatgca
aaggaatttgctgattgggtggcaaaggttcacaagcagccatgtcacattgtttacact
gattatcggcctacacctcttcagcattatattttccctgctggaggtgatggtctattt
ttggtggtagatgagaaaggaaaattccgtgaggatagctttcagaaagctttaaatgca
ctagttcccacaagtgaaagtgacaggaaaaaagataatggtaaatcaaagaaggggttg
ttgatgggaaaagttaatgaacaaagtgacatctttaagttggtgaaaatgatcattcag
cgacagtacgaccctgtgataattttcagctttagcaagagggaatgtgaatttctcgca
atgcagatggcaaggatggatttaaatgatgatgatgagaaaggaaacatagaaataatc
ttctggagtgccatggatatgctttccgatgatgataagaagctacctcaggtatcaaac
atgttaccccttctgaaacgtggaataggtgtgcatcattctggcttgcttcccatccta
aaggaagtaattgagatattatttcaggaaggactgatcaagtgtttgtttgctacagag
actttcagcattgggttaaacatgcctgctaaaactgttgtgtttacaaatgttcgtaaa
tttgatggggacaagtttagatggatatctagtggagagtacatacaaatgagtggccgt
gctggtcgtcgaggtattgatgcacgcgggatatgcattcttatggtggatgaaaggatg
gaaccatctactgctaaaatgatgctcaagggaaatgctgatagtttgaacagtgccttc
cacctaagctacaatatgctattgaatcaattgcgctgtgaagatgctgatcctgaaagt
atgcttcggaattcgttctaccagtttcaagccgatcgtgcaattcctgaccttgagaaa
caagtaaaggctcttgaagaagagagggattccatgataattgaagaagaagatagtttg
aagaattattacaatctgattcagcaatataaaagtttgaagaatgatattcgtgatatt
gtgtattctccaaaatattgtttaccctatatgaaatctggcaggcctgtatgtataaaa
tgcattgatgacgaaaagtctccatctttctccattgaggaccatgctacttggggtgtt
ttaatggacttccatagagtgaaaagtgctattgaagatgatgccagtagaagaccggaa
gatgcaagctatgcccttgatattcttacaagatgtgctgtgagcaaagatggtcttggg
aagaaacaaatcaagattgtccctttgaaagagccaggggaaccacttgttgtttctgtg
cctctctctcaggttactagtttaagtagtgcacgcttgaacatacccaaagatcttttg
ccattagaagctcgagagaatgccttgaagaagctttcagaatttatttctagatatgct
aatgggatgcctttggatcctgaagaaatgaatattcaaagtaactcatacaaaaaggca
gtccgtaggttggaggcattagagaacctgtttgaaaaacatgaaattgcaaaatcccct
cttattgagcaaaagctcaaacttctgaacaggaaggaagaattgacagccaaggtcaga
tcaattaagaaaacaatgcgttcatccacagtattggcttttaaagatgagcttaaggcc
agaaaacgggttctgaggaggctaggatatattactagtgatgatgttgttgagttgaag
ggcaaggttgcttgtgagatcagcagtgctgatgagttaactctgacagagcttatgttc
agtggggtcttaaaggatgtaaaggcagaagaaatggtgtctttgctctcttgttttgtt
tggcaggagaggctccaagatgctgcaaagcccagggaggaacttgagttgctctttaca
caactacaagatacagcacggaggattgccaaagctcagcttgagtgcaaggtccaaatt
gatgtggagagctttgtaagttcatttcggcctgatattatggaagctgtatatgcttgg
gcaaaaggatccaagttctatgagattatggaaattacacaggttttcgagggcagctta
atcagagccatcagaagactggaagaagttcttcagcagcttattttagcggccaagtct
attggagagacagagctcgagtcaaaatttgaagaggctgtctctaagatcaaaagagac
atagtgtttgcagcatctctatacttgtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (24)   

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