KEGG   Exaiptasia diaphana (Aiptasia): 110233742
Entry
110233742         CDS       T05080                                 
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
epa  Exaiptasia diaphana (Aiptasia)
Pathway
epa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:epa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110233742
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:epa03019]
    110233742
   03041 Spliceosome [BR:epa03041]
    110233742
   03009 Ribosome biogenesis [BR:epa03009]
    110233742
   03016 Transfer RNA biogenesis [BR:epa03016]
    110233742
Enzymes [BR:epa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110233742
Messenger RNA biogenesis [BR:epa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     110233742
Spliceosome [BR:epa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    110233742
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    110233742
Ribosome biogenesis [BR:epa03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    110233742
Transfer RNA biogenesis [BR:epa03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    110233742
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 110233742
NCBI-ProteinID: XP_020894721
Position
Unknown
AA seq 849 aa
EYPFILDPFQKEALKCLZNNQSVLVSAHTSAGKTVVAEYAIAMSLKNKQRVIYTTPIKAL
SNQKYRELYEEFQDVGLMTGDVTINPSASALVMTTEILRSMLYRGSEVMREVAWVVFDEI
HYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWITHLHKQPCHVVYTDFRPT
PLQHYVYPSGGDGLFLVVDEKGDFREENFNKAIAVIRDGGTDPGSLKGRKGGTKGPSNTF
KIVKMIMERNFQPVIIFSFSKKECEAYALQMSKLDFNTTQEKGLVEEVFNNAIDCLSDDD
KKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFAEGLIKALFATETFALGLNMPART
VVFSSSRKFDGKDFRFITSGEYIQMSGRAGRRGLDERGIVILIVDEKMGPDVGKSLLKGH
ADPLNSAFHLTYNMVLNLLRVEEINPEIMLEKSFYQFQNYSAIPDMIEKIKKLEKQRDEF
EIPNEESITAYYKIRQQLKKLGDDMLAFIHQPKYCLPFMQPGRLVKIQNRDVDFGWGVVL
NFQKKANQKSGGPISDAIYVLEVLVKCSSKRIRSADGEMPQPCGPDEKGEMQVVPVLLHL
VKRLSSVRLYIPKDLRSPDSRQSVGKSIQEVSKRFPDGLPLLDPIEDMGIKDDGLKKIIR
KIEMLEHRMYSHPLHKDASLDSLYKLCEEKAQIIDKAKTARKELKKARTILQLDELKCRK
RVLRRLGYSTAADVIELKGRVACELSSGDELLLTEMIFNGVFNDLTTEQSVALLSCFICE
ERSDELPKLKEELAGPLRQMQESARRIAKVSQEAKMDLDIEDYVESFRPHIMDVVFAWRM
ALLSLIFVK
NT seq 2550 nt   +upstreamnt  +downstreamnt
gaatatccatttatcctggatccctttcaaaaagaagcwctcaagtgtctasaaaacaat
caatcagtgcttgtgtctgctcatacatcagcaggaaagacagttgttgcagaatatgct
attgcaatgtccttaaagaacaaacaaagagtaatctacacaacgcctatcaaggctctt
agcaaccaaaagtaycgtgaattatatgaagagttccaagatgttggtctgatgacaggt
gaygtgaccatcaacccatcwgctagtgcacttgtcatgactactgagattcttaggagt
atgctgtatagaggctcagaggtcatgagggaggtggcctgggttgtttttgatgaaatc
cattacatgagagataaagagcgtggtgttgtgtgggaagagaccatcatccttctccct
gataatgtccactacgtgttcctgtctgccactattcccaatgcacggcagtttgcagag
tggataacgcatctccataagcagccgtgccacgttgtgtacactgatttccgtcctaca
ccacttcaacattatgtctatccttctggaggagatggtttgttccttgttgttgatgaa
aagggtgattttcgtgaggagaatttcaacaaagccattgcagttataagagatggagga
acagatcctggttcattaaaaggacgcaaaggagggaccaaaggtccatcaaacacattc
aagattgtcaagatgattatggagagaaactttcagcctgttatcatcttcagcttcagc
aaaaaagagtgtgaagcttacgcactgcagatgtccaaactggacttcaacacaacgcaa
gagaaaggattggtagaagaagtgttcaacaatgccatagactgtttatccgacgatgac
aagaaactacctcaagttgaacatgttcttcccttactgaagagagggattggtatccac
cattctggacttctacccatcttgaaagagactatcgagattctatttgctgaaggactt
atcaaggcactgtttgctacagagacgtttgctttgggtctcaacatgccggcaagaacg
gttgtcttctcaagctcacgaaaattcgatggaaaagattttagatttataacatctggt
gaatacattcaaatgagtggacgagcagggcgaagaggtctggatgaaagaggcatcgtt
attctgattgtmgatgaaaaaatgggwccygatgttgggaaaagtctactcaagggccac
gcagatccgctgaacagtgctttccatcttacgtacaatatggtcctgaatctgcttcgt
gttgaggaaatcaaccctgaaataatgctggagaaatctttctatcaatttcaaaactat
tctgccatccctgacatgattgaaaaaatcaagaaacttgaaaaacagagagatgaattt
gaaatcccaaacgaggagtcgatcacagcgtactacaagatacgacaacagttgaagaaa
ctaggagacgacatgttggcgttcatccatcagccaaagtattgccttccgtttatgcaa
ccaggacgacttgtaaagattcaaaatagggacgtggactttggatggggtgtggtactc
aatttccagaaaaaagcaaaccaaaagagcggaggaccaataagtgatgcgatatatgtg
ttagaagttcttgtaaaatgttcaagtaaaaggattcggtctgcagatggtgagatgccg
cagccatgcggtcctgatgagaaaggggagatgcaggtcgtgcctgttttattacatctt
gttaaacggctcagcagtgtgagattatatattcctaaagatttgcgatcacctgatagc
agacaaagtgttggtaaatcgatacaggaggtttctaagcggtttcctgatggcttaccg
ttattagatcctattgaagatatgggaatcaaagatgatggcttgaaaaaaattataagg
aaaatagaaatgcttgaacatcgaatgtactcacatccacttcataaggacgcctctctc
gactcgctatataagctatgtgaagaaaaagcacagatcatcgacaaagcaaagaccgca
cgaaaagaacttaaaaaagccaggacgatattacaactggatgaactaaaatgtcgaaaa
agagtcttaagaaggctgggttattctactgcagctgatgttatcgagctaaaaggccgt
gtagcatgtgaactcagcagtggtgacgagcttttgttaactgaaatgatttttaacggt
gtgttcaacgacttgacaaccgaacaaagtgtcgccctcttgagctgttttatttgtgag
gaacggagcgacgagctacccaagttaaaagaagagctcgctggtccattgagacagatg
caggagtcagcccgccgcattgctaaagtctcccaagaagccaaaatggatttagatatc
gaggattacgtggagtccttccgacctcacatcatggatgtcgtgtttgcttggcgaatg
gctcttctttctctcatatttgtaaaatga

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (55)   

Download RDF
DBGET integrated database retrieval system