KEGG   Exiguobacterium sp. U13-1: ESP131_01805
Entry
ESP131_01805      CDS       T04561                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
exu  Exiguobacterium sp. U13-1
Pathway
exu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:exu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ESP131_01805
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:exu03019]
    ESP131_01805
   03009 Ribosome biogenesis [BR:exu03009]
    ESP131_01805
Enzymes [BR:exu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ESP131_01805
Messenger RNA biogenesis [BR:exu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ESP131_01805
Ribosome biogenesis [BR:exu03009]
 Prokaryotic type
  rRNA helicases
   ESP131_01805
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 SWI2_SNF2 AAA_30 AcetylCoA_hydro
Other DBs
NCBI-ProteinID: AOS99102
Position
complement(344937..346373)
AA seq 478 aa
MTRTQFNDFNLSTPILDSIEQLGYTTPTEVQQSVIPVVLSGKDVIVKSRTGSGKTASFAI
PLCELVEWEENKPQVLVLTPTRELALQVKEDIMNIGRYKRIKATAVFGKQPFRGQVTELK
QKTHVVVGTPGRVRDHIERGTLSLEKVRYVVLDEADEMLNMGFLDQVDAILSELPKERMT
LLFSATFPEDIAQLSDRYMDAPKRIEAGETVVSTITHSYISVTEKTKFAILKDVLVAENP
DRCMIFCRTKEHVDFVANGLRAHDYPVEAIHGGMEQDDRLDAMKAFRAGKFRILVATDVA
ARGIDIENITHVIQYDLPVERESYVHRTGRTGRAGAAGQAISLVTPADERRLKEIEQYHG
KLTRRQAPTEKDLMRTADAFEEKMATEDTRSSKTEQLDADIMKLFFNGGKKKKLRAVDFV
GTIAKIEGVTADDIGIISIQDTLTYVDILNGKGPLVLRAMKTTKVKGKQLKVYEAFKK
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgacacgtacacaatttaatgattttaacttaagcacaccgattctcgattcaatcgag
caactcggttatacgacaccaaccgaagttcaacaatccgtcattcccgtcgtattgtct
ggaaaagacgtcatcgtcaaatcacggacagggagcgggaaaacggcatcgtttgcgatt
ccactctgtgaactcgtcgagtgggaagaaaataaaccacaagttttagtcttgacgcca
acacgtgagcttgctttgcaggtcaaagaagacatcatgaacatcggtcgttataagcgg
atcaaagcgactgccgtcttcggcaagcaaccgttccgcgggcaagtcacggagctcaag
caaaagacacacgtcgtcgtcggtacaccgggtcgcgtacgcgatcatatcgagcggggc
acgttatcgcttgagaaagtccgttacgtcgtcttagatgaagcggatgaaatgctgaat
atgggcttcttagatcaagtcgatgccatcttgtccgagttaccaaaagagcggatgaca
ctgttgttctctgcgaccttccctgaagatatcgcacagctaagtgaccgttacatggac
gcgccgaaacgaatcgaagcaggcgagacggtcgtctcgacgatcacacatagttatatt
tcggtaacggaaaagacgaaattcgcgattttgaaagatgttctcgtcgctgaaaacccg
gatcgctgcatgatcttctgtcggacgaaagaacacgtcgatttcgtcgcgaatggtctc
cgcgcacatgactatccggttgaagcaattcacggtggaatggaacaagacgatcgactt
gatgcgatgaaagccttccgtgccgggaagttccgaattctcgtcgcaacagacgtcgca
gcacgcggcatcgatattgaaaacatcacgcatgtcatccagtatgatctccctgtcgaa
cgggaaagttacgtgcaccggaccggtcggacgggacgtgcaggagcagcaggacaagcg
atcagtctcgtcacgccggcagacgaacgtcgtctcaaggaaatcgagcagtatcacggg
aagctgactcgtcgccaagcaccgacagaaaaggacttgatgcggacagcggatgcgttc
gaagagaagatggcgacggaagatacgcgttcttcgaaaacggagcagcttgatgcggac
atcatgaaattgttctttaacggcgggaaaaagaaaaaactccgtgccgtcgacttcgtt
ggaacgatcgcgaagattgaaggcgtcacagcagacgacatcggcatcatctcgattcag
gatacgttgacgtatgtcgatatcctcaacgggaaaggtccgcttgtcctccgggcgatg
aagacgacgaaggtcaaagggaaacaattgaaagtgtacgaagcattcaagaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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