KEGG   Allofrancisella guangzhouensis: SD28_05055
Entry
SD28_05055        CDS       T03527                                 
Name
(GenBank) DNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
fgu  Allofrancisella guangzhouensis
Pathway
fgu03420  Nucleotide excision repair
fgu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SD28_05055
   03430 Mismatch repair
    SD28_05055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fgu03400]
    SD28_05055
Enzymes [BR:fgu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SD28_05055
DNA repair and recombination proteins [BR:fgu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SD28_05055
   MMR (mismatch excision repair)
    Other MMR factors
     SD28_05055
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_12 ResIII AAA_30 DEAD His_Phos_2
Other DBs
NCBI-ProteinID: AJC49043
UniProt: A0A0A8E4W8
Position
1070950..1073025
AA seq 691 aa
MQYTSEQQKIIQHDISSHALVSAVAGSGKTQTLIARIEYLLSKGVPADKILVLMYNKSAQ
LDFASRLKKILPTEKSEYINVRTLHSLGNSFLQAFAKAGYIKFDKILKDYEVDSILFNLI
KSYQKEFKIIKEIDSDRVETFKEHISILKSDLCLNNKKLKSLNPKEKKLLDKVFVEFNKE
CEKLKAITYDDMIYLPAKFFEKNKTNISRANNLYSHIIIDEYQDINPIQQFFLKCLVGDN
TYIMAVGDVDQTIYQWRGSTPYYMLEGFKKDFKKVEQYQLSYTFRYGDLISLMANNIITN
NKKRHDNLCITYPKLDRTTNISILDNSDKTVLKLKSLIEAGVKASDIAILVRKYNSTTVF
ELSCLYNDLPYHVVADKDIFSENLFKAIYGYLMLLNKGCGFKKHAPDQRIGFIKAMFDYP
SLYLKKDQKQTVAVKIAKNIDQATSLIIELSKNVDKSFKEKNILAVAHCWRTIFNNTRAK
RPGKAIDFIFETLEIEKLISKVSTETYSNRSKLQIIEGIFSFAKSKKGAFNEFIDLLYKL
YMKSIQQESKVIANSDQIQIMSMHRAKGLEWDYVVIHDATEGSFFGENNLKVSDEILEEE
RRLFYVAITRVKKHLFIVSADDIDKLYAWYKIKNNTYPKDLKCKNSLRFLYESNLAECEN
YLSSLNQLKKEDIKNRIFKKYHLSRDMSTQS
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgcaatacacatctgagcaacaaaaaattatacaacatgacataagtagccatgcgtta
gtttcagcagtagcaggcagtggtaagactcaaactcttatagcaagaatagagtatttg
ttatctaaaggtgttccagcagataaaatacttgttcttatgtacaataaatctgcacaa
ttagattttgcgtctaggttaaaaaaaattttacctactgagaaatcagaatatataaat
gtacgtacactgcattctttaggtaatagctttttacaggcttttgctaaagcagggtac
ataaagtttgataaaatcctcaaagattatgaagttgatagcattttatttaatttaatt
aaaagctaccaaaaagagtttaaaattattaaagaaatagatagtgatagagtagaaact
tttaaagaacacatttctattttaaaatcagatctttgtttaaataataaaaaattaaag
agtttaaaccctaaagaaaaaaaattgttggataaggtatttgttgaatttaacaaagaa
tgtgaaaagttaaaagcaattacgtatgatgatatgatttatcttccagcaaaatttttt
gaaaaaaataaaactaatatctcacgagctaacaatttatattcacatattattatcgat
gaataccaagatataaatccaatacaacaatttttcttaaaatgcttagtgggtgataat
acttatattatggcagtaggagatgtggatcaaactatatatcaatggcgtggttcaact
ccatactacatgttagagggttttaaaaaagattttaaaaaagttgaacaatatcaatta
tcttatacttttcgctacggtgatttgatatcacttatggccaataatattataactaat
aacaaaaaacgtcatgataatttatgtattacctacccaaagttagatagaactacaaat
attagtattttagataatagtgataaaactgtattaaaattaaaatctctaattgaagcg
ggtgtcaaagcgagtgatattgctattttagtaagaaaatataattcaaccactgttttt
gaattaagctgtttatataatgatttaccatatcatgtagttgctgataaagatattttt
agtgaaaacctatttaaagctatttatggttatttaatgcttttaaataaaggttgtggt
tttaaaaaacacgcgcctgatcagcgtatagggtttataaaggctatgtttgattacccg
tcactatatcttaaaaaagatcaaaagcaaactgtagctgtaaaaattgctaaaaatatc
gatcaagctacaagtttgattatagagttaagtaaaaatgttgataaatcttttaaagaa
aaaaatatccttgctgtggcacactgttggcgaactatttttaataatacacgtgcaaaa
agaccaggtaaagccatagacttcatatttgaaacgctagaaatagaaaagcttatatct
aaagtctcgacagaaacatactctaataggtcaaaactacaaataattgaagggatattt
agttttgcaaaaagcaaaaaaggagcttttaatgagtttatagatcttttatataaacta
tatatgaaatctattcaacaagaatctaaagttattgcaaactctgatcagatccaaata
atgtctatgcatagagcaaaaggtctagagtgggattatgtggttatccatgatgctaca
gaaggtagcttttttggtgagaacaacttaaaagtttctgatgaaattttagaagaggag
cgtagacttttttatgtggctattacaagagtaaaaaaacacctttttatagtctcagct
gatgatattgataagctctatgcgtggtataaaataaaaaataacacctacccaaaagat
ttaaagtgtaaaaatagtcttaggtttttgtatgaaagtaacttagccgaatgtgaaaat
tatttaagtagtttaaatcaactaaaaaaagaggatataaagaacaggatttttaagaag
tatcatttgagcagggacatgtcgactcaatcctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (58)   

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