KEGG   Flavobacterium psychrophilum FPG101: FPG101_05420
Entry
FPG101_05420      CDS       T03281                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
fpy  Flavobacterium psychrophilum FPG101
Pathway
fpy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fpy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FPG101_05420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fpy03019]
    FPG101_05420
Enzymes [BR:fpy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     FPG101_05420
Messenger RNA biogenesis [BR:fpy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     FPG101_05420
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C V-ATPase_H_N P-loop_SecA CMS1
Other DBs
NCBI-ProteinID: AIN71411
Position
complement(1183229..1184473)
AA seq 414 aa
MLFEDLSLSKSIQRAVFEEGYLSANPIQEQSIPIILAGQDLIGCAQTGTGKTAAFAIPII
HNLHRIVGSSKKEKLIRTLVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVE
QLKSGIDILIATPGRLLDLHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLTDPATVQVAPVSSTIETVDQRLYYVDKADKRQLLYHII
KEEKLSNILVFSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACDILV
ATDIAARGIDIEFLPYVINFDLPNIPETYVHRIGRTGRAGREGMAISFCGKDEEGYWKDI
IKLTKAKVTTIDEHPFPWKKGAQEATKVNSSNRSGEKEKSRKSDASKKNKKRWY
NT seq 1245 nt   +upstreamnt  +downstreamnt
atgttattcgaagatttatcattatcaaaaagtatacaaagagctgtttttgaagaaggt
taccttagcgcaaaccctattcaagaacaatctatcccaattatattagcaggacaagac
ttaataggttgcgcacaaacaggaacaggaaaaacagccgcctttgcaattcctattatt
cataatctacacagaattgtaggttcatcaaaaaaagaaaaactaattcgcacacttgtt
gttactcctactcgcgagttggcagtacaaataggcgaaagtttcgacacttacggaaaa
tatacgaacttaaaacagctaactatttttggtggtgtatcgcaaaacccacaagtagaa
cagctaaaaagcggtatcgacattctaattgcaaccccaggaagattgctagatttacac
aaacaaggatttattaatttagaccatatgcaccatttagtgcttgacgaagccgaccaa
atgctagatatgggatttataaacgatgtaaaaaagattgtaaaactaacacctaaaaac
cgtcagaccttactattctctgcaacaatgcctattgcaattcgtgaacttgccgaaatg
ttccttacagatcccgcaacagtgcaagtagcacctgtatcctctacgatagaaacagta
gaccaacgcttgtattatgtagataaagctgacaaaagacaattattatatcatattatt
aaagaagaaaaactaagtaacattcttgttttttccagaacaaaacatggtgccgataat
attgccaaagcattaaaaaaacaagggctaaatgccgaagctattcacggagacaaatct
caaaatgcacgccaaagagctttagataattttaaaaacaaagcatgtgatattctcgta
gccacagatatcgctgctcgtggtattgatatagagtttttaccttatgtcattaatttc
gatttgcctaatattcccgaaacttatgtacacagaataggacgaaccggtcgtgcaggt
cgagaaggaatggctatttccttttgcggaaaagacgaagaaggctattggaaagatatt
ataaaactcacaaaagcaaaagttactacgatagacgaacacccatttccttggaaaaaa
ggtgcgcaagaagccacaaaagttaatagttctaaccgaagcggagaaaaggaaaaatct
agaaaatccgatgcatcaaagaagaataagaaacgctggtattaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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