KEGG   Fragaria vesca (woodland strawberry): 101292001
Entry
101292001         CDS       T02666                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101292001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fve03041]
    101292001
Enzymes [BR:fve01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101292001
Spliceosome [BR:fve03041]
 Complex C
  Other components
   Step II factors
    101292001
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD AAA_22 HA2_N AAA_19 SLFN-g3_helicase Flavi_DEAD AAA_24 nSTAND3 AAA_30 T2SSE ATPase AAA_16 SRP54 Myosin_head NB-ARC Microtub_bd cobW ABC_tran AAA_33 ResIII
Other DBs
NCBI-GeneID: 101292001
NCBI-ProteinID: XP_004295532
Position
LG3:6271586..6275058
AA seq 1063 aa
MVESKLEKSGGGGGGGGGLHVRGTERVVFRHPAKKLGFDGGVRSRYDERRDYRDGGGGGR
SRVRRRDEEDGYGGDCGRKRSRYDGGSKREPHSVVSAWDCMSYSPLVQIRASGEGVKSLD
SRRGGRYEISESMRLEMEYDCDRAWYDREEGSAVVDTSDGSGLFYGDDAFCQKKEAELAK
RLVRRDGTKMSRAQSKRLAQHAADNAQWEDRQLLRSGAVRGVEVQSEIDDEDESKVMLLV
HDTKPPFLDGRVVFTNQADPVLPVKDPTSDMAVIARKGSALVRGIHQKQTLNKSRQRFWE
LAGSKLGDILGVEKTAEHIDADTSLVGKDGEVDFKEDAKFAQHMKNGDAVSEFTKSKTIS
EQRQYLPIYSVRDELLQRIRENQVIIVVGETGSGKTTQLTQYLHEDGYTVNGIVGCTQPR
RVAAMSVAKRVSEEMETDLGDKVGYAIRFEDVTGANTVIKYMTDGVLMRETLRDSDLDKY
RVIVMDEAHERSLYTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSDFFGGALIYPIPG
RTFPVDKRYIGPCEDYVEAAVTQAMKIHIASPPGDILIFMTGQEEIEAACYSLAERMEQL
ISSSKKGMSKLLILPMYSQLPADLQAKIFQRSEDGVRKCIIATNIAETSLTVDGILYVVD
TGYGKMKVYNPRMGMDALQVFPSSRAAADQRAGRAGRTGPGTCYRLYTENAYLNEMLASP
VPEIQRTNLGYVVLLLKSLKVNNLLDFDFMDPPPQENILNSMYQLWVLGALDNVGGLTGL
GWKMVEFPLDPPLAKMLLMGEELGCVDEILTIVSMLSVPSVFFRPKDRAEESDAAREKFS
VPESDHLTLYNVYQQWKQHQYRGDWCNDHFLHVKGLQKAREVRSQLLEILKTLKVSLTSC
WPDTDTVRKAICSAYFQNAAKFKGVGEYVNCRTGMPCHLHPSSALYGIGCTPEYVVYHEL
ILTKKEYMQCVTAVEPQWLADWGPMFFSVKESDTSVLQNKKRHQEEKTAMEEEMENLRKA
QAREEAVSKQREREKRSKQQQQVSLVGLHPGSSTYLRPKKLGL
NT seq 3192 nt   +upstreamnt  +downstreamnt
atggtggaatcgaaactcgagaagagcggaggaggaggaggcggcggcggaggattgcat
gttcgcggaacggagagagttgttttcaggcatccggcgaagaaattagggtttgatgga
ggtgtcaggagtaggtatgatgaaagaagagattacagagatggtggtggtggtggtagg
agtagggtgaggcgaagagatgaagaagatggatatggtggagattgtggaagaaagaga
agtagatatgatggtggttcgaagagggagccgcattcggttgtgtctgcctgggattgt
atgtcttactctcccctggtgcagatacgtgcttctggagagggagtgaaatctttggat
tcgagacgtggtgggagatatgagattagtgagagcatgcgtttggagatggagtatgat
tgtgaccgtgcgtggtatgatagagaagaaggaagcgcggtggttgatacgagtgatggt
tccggtttgttttatggggatgatgctttttgtcagaagaaggaagcggagctggcgaag
aggctggttaggagagatgggactaagatgagccgtgctcagagcaagaggttggcgcag
catgctgcagataatgctcagtgggaggaccgtcagcttctgcggtcgggtgctgttaga
ggtgttgaggtgcagagtgagattgatgatgaagatgagagcaaagttatgctccttgtt
catgatacaaagcctcctttcctggatgggagagttgtttttaccaatcaggctgatccg
gttttgccggtgaaagatcccacatctgatatggccgtaattgcacgcaaagggtctgct
ctagttaggggaatccatcaaaagcaaactttgaataaatcacgtcagcgattttgggag
cttgctggttcgaaacttggtgatattcttggtgttgagaaaacagctgagcatattgat
gcggatacgtctttagtaggtaaagacggtgaagttgatttcaaagaagatgcaaagttt
gctcagcatatgaagaatggggatgctgtgagtgaattcacaaagtcgaaaaccatctcc
gaacaacgccagtatctgcctatatattctgtgcgtgatgaattactgcagcgaattcga
gaaaatcaggttattatagttgttggagaaactggttctggaaagacaactcaactgaca
caatatctgcatgaagatggctacactgtaaacggtatagtgggctgcacccaaccaagg
cgtgtggcagccatgagtgttgcgaagagagttagtgaagagatggaaactgaccttggt
gacaaagttggctatgctattcgttttgaggacgtgacaggggcaaacacggttataaag
tacatgactgatggagtacttatgcgtgaaacactcagagattctgaccttgacaagtac
cgtgtaattgtgatggatgaagcccatgagaggtcactatatacagatgtgctgtttggg
attttgaaaaaagttgttgcccaacgtcgtgattttaagctcattgtgacatctgctact
ctaaatgctcagaaattttcagatttctttggaggtgcactgatttatcccattcctgga
agaacatttcctgtggataaaaggtacataggcccatgtgaagactatgttgaagctgca
gtgacacaggccatgaaaattcacattgccagccctccaggtgatatcctcatcttcatg
accggccaagaggaaattgaagcagcctgttattctcttgcagagcgaatggaacaactt
atctcctcctctaagaaagggatgtcaaaactcttgatactccctatgtattcacagctg
ccagctgacttgcaagcaaagatattccaaaggtctgaagatggggttcgtaaatgcatt
atagcaacaaatattgctgagacatctttgaccgtagatggtatcttgtatgtcgttgac
accggctatggtaaaatgaaagtatacaaccctaggatgggtatggatgctcttcaagta
tttcctagtagtcgtgctgctgctgaccaacgcgctgggcgtgctggtagaactgggcct
ggaacatgttatcggttgtacacagagaatgcctacctaaatgaaatgctggccagtcct
gtaccagagatccagaggacgaaccttggctacgtggtattgttgctgaaatctctcaag
gtcaataacttgcttgattttgatttcatggacccacctccccaggaaaatattctcaat
tctatgtaccagctgtgggtcttgggagctctcgacaatgtgggaggtttgactggcttg
ggctggaaaatggtggagttcccgttggaccctccacttgctaagatgttgttgatgggt
gaagagctaggatgcgtagatgaaattttgacaattgtatctatgctttcagttccgtca
gtattctttaggccaaaagatagggcagaggagagcgatgctgctcgggaaaaattttca
gtcccggagtctgaccacttgacattatataatgtttatcaacagtggaaacaacatcag
tatcggggggactggtgcaatgaccattttttgcatgttaaagggttacaaaaggctaga
gaggttaggtcacagctgctagagattctgaagacgttgaaagtttcactgacatcttgt
tggcctgatactgacactgtgagaaaagctatttgctctgcatactttcaaaatgcagca
aagtttaagggtgtgggggagtatgttaattgccggactgggatgccatgccatttacac
ccgagcagtgctctttatggtataggctgcacccctgagtatgtggtttatcatgaactg
attttgacaaaaaaggagtatatgcagtgtgtcacagcagtggagccgcagtggttggct
gattggggacccatgttcttttctgtaaaggagtcggatacatcagtgttgcagaataag
aagaggcatcaggaagagaaaacagctatggaggaggaaatggagaatctgaggaaggct
caagcacgggaagaggcagtaagcaagcagagggagagggaaaagaggtctaaacagcag
cagcaagtctcattggtgggtttgcatccgggttcttctacgtatttgaggccgaagaaa
cttggcttataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (23)   
   Pfam (23)   
All databases (57)   

Download RDF
DBGET integrated database retrieval system