KEGG   Hevea brasiliensis (rubber tree): 110637938Help
Entry
110637938         CDS       T05150                                 

Definition
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
hbr  Hevea brasiliensis (rubber tree)
Pathway
hbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110637938
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hbr03041]
    110637938
Enzymes [BR:hbr01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     110637938
Spliceosome [BR:hbr03041]
 Complex C
  Other components
   Step II factors
    110637938
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Helicase_C IBR HA2 OB_NTP_bind AAA_22 DEAD zf-C3HC4_2 zf-RING_2 zf-C3HC4 zf-RING_UBOX AAA_19 ABC_tran AAA_29 AAA_30 Helicase_RecD T2SSE
Motif
Other DBs
NCBI-GeneID: 110637938
NCBI-ProteinID: XP_021644020
Position
Unknown
AA seq 1717 aa AA seqDB search
MTPFSNSYQRSRHRQFRPPPLSNHRPYYDHQRPSQKRLFVVKLLSNHHRGGCTPSIDSIV
SECYPKPCRFYIRTSGTLAASLLFEQQVDALDAVVSLWERRLAGEHLFTPVVDFSFDDDF
NERVRSLFQLYVEKLLQGESVEKLERKVNDLSVENEKVASFLRKARGLQAFSEAEARNKQ
LVEEMNRIMIRIEEFKCAVRCVTDYLDGKEVEELAVLGFKEGNSFNWSKIHSLLLRESRR
LEDGLPIYGNRSGILQQIKLQQVIVLIGETGSGKSTQLVQFLADSGVASSGSILCTQPRK
IAAIYLAKRVGEESIGCYEDNSIVCYPTYSSAQCLNSKVIYMTDHCLMQHLMKDKTLSGV
SCIIVDEAHERSLNTDLLLALIKELLIERHDLRLIIMSATVDASKLSEYFFGCGTFHVFG
RSFPVQINYVPGPSIGSSGPLPISIAPYVSDVVKMAMEIHQEEKEGAILAFLTSQLEVEW
ACEKFQSPSAISLALHGKLSHEEQSHVFQNYPGKRKVIFATNLAETSLTIPGVRYVVDSG
MVKESKFEPTSGMNVLRVSKISQSSAKQRTGRAGRTGPGKCYRLYSELDYQSMDLHQEPE
IRKVHLGIAVLRILALGIKNVLEFDFIDAPSGKAVNMAIRNLVQLGAVVRRDDTFELTLD
GHYLVKLGMEPRLGKIILESCRYGLRMEGVALAAVMANASSIFCRVGTSDDKQKSDCLKV
QFCHRDGDLFTLLTVYREWESVSPDNRNKWCWNNSINAKTMRRCKETVLELENCLKHELS
IIIPTYWRWSPYVVTAHDKSMKKILLSSLADNVAMYSGYDRLGYEVVSSGEYIQLHPSCS
LQVYGQKPNWVVFGELLSISSQYLVCVTAVDFDCLSAFSPPLFDLSKMRSKKLHLRVISG
FGSTVLRRFCGKSNTSLLSLVSHVQKNCMDERIGIEVNVDNNEILLYASIQDIQKVYGLV
IDALEYEVKLLSNECLEKCLYHRGRAGASPPVALFGAGAEIKHMELENRNLSVDVFLSNA
NRADDKEVLAFFEKSVSGVCSFHRFAGSGQNGDHMEKWGSVTFLAPEAAMKALEFNGFDL
SGSSLKLSPARSSVGGSNKLSSFAALKAKVTWPRRYSKGYAVVRCERNDAMFVVEDCFNL
LIGGRLVHCEPSTKDINCVIIRGLDRDTSELEILEVLQIATSRRILDVFLIRGDAVNNPP
LGACEEAILKEIAPFMPNQGPLSNYCHVQVFSPEPKDTFMKAWITFDGSLHLEAAKALQH
IQGKVLAGCFLWQKMQCQQVFHSSVSCPAPVFPFIERQLNSILKRFMHRPGVHCRLERNE
NGSYRVKISANATKIVAELRRPLEQLMNGKMVNHGSLTQAVLQHLFSSDGRLLMNSLQKE
TGTYILFDRQNLNVRIFGPENKIALAEHKLIKSLLALHDNKQINIPLQGGFMPHDLMKKV
VEKFGPDLHGLKEKFPEATFMLNTRRHVISFSGKRDLRPRVEDIIHDFARSLCVSGAADQ
PEFEATTCPICLCEVEDCYQLEACGHKFCRSCLVEQLESAMRRHDGFPVRCAREGCGMHI
WLIDLKSLLPCEMLEDLFRASLGAFVASSGGLYRFCPSPDCPSVYRVSDTGMVGGLFVCG
ACYAETCTRCHLEYHPYVSCERYKEFKEDPDLSLKDWCKGKEHVKSCPACGYIIEKVDGC
NHIECRCGKHICWVCSESFSSSDECYGHLRLIHLTII
NT seq 5154 nt NT seq  +upstreamnt  +downstreamnt
atgactcccttctccaacagctaccagcggtcccgccaccgccaattccgccctcctccg
ctttccaaccaccgtccttactatgaccaccaacgcccatcccaaaaacgtttatttgtt
gtcaaactcctttccaaccaccaccgtggtggctgtactccttcaattgactctattgtt
tcggaatgctaccccaagccttgcagattttacatcagaacctctggaacactcgccgcc
agcctcctttttgagcagcaggttgacgctctcgacgccgtcgtttccctttgggagcgc
cggcttgcaggggaacatttgtttactccggtggttgattttagtttcgacgatgatttt
aatgagagagtgagaagtttgttccaattgtatgtagagaagcttctgcaaggggagtct
gtcgagaaattggagaggaaggtaaatgatttgtctgttgagaatgagaaagttgcgagc
tttcttaggaaggctaggggtcttcaagcttttagtgaggctgaggcaaggaataagcag
ttggtggaggagatgaatcgaattatgattaggattgaggagtttaagtgtgcagtcagg
tgtgtaacggattatctggacgggaaggaggttgaggagttggcagttttggggtttaaa
gaagggaatagttttaattggagtaaaatacatagtttgctattgagagagtctaggcgt
cttgaagatgggttgcccatatatggtaataggagtgggattttgcagcaaataaaattg
cagcaggtgatagtcttgattggagagacaggttcaggaaagagtacgcagttggtacag
tttcttgctgattctggtgttgcttccagtggttcaattttgtgtactcagccccgcaaa
attgctgcaatttacctggcaaaaagggttggtgaagaaagcattggatgttatgaggat
aattcaattgtctgctatccaacatattcatctgcacagtgtcttaattcaaaggtaata
tatatgactgatcactgtctaatgcagcaccttatgaaagataagactttgtctggagtt
tcatgcattatcgtagatgaggcccatgaaagaagcttgaatactgatcttcttttggcc
ttgattaaagaattgcttattgagaggcatgacctaaggcttattataatgtctgcaaca
gttgatgccagcaaattgtcagaatacttctttggctgtggaacctttcatgtgtttggg
agaagctttcctgttcaaatcaattatgttcctggtccctccataggttcttctggtcca
ttacccatttctattgctccatatgtttctgatgttgttaagatggcaatggagatccat
caagaagagaaagagggggcgattcttgcgtttttgacttctcagctggaggtagaatgg
gcctgtgaaaagtttcagtctccctctgcaatctcattggcattacatggaaagctttcc
catgaagagcaaagtcacgttttccagaattatccagggaagagaaaagttatttttgct
accaatttggcagaaacatccttgactattcctggggtcaggtatgtggttgattctgga
atggttaaggaaagcaaatttgaacctacctctggcatgaatgtcctcagagtttccaag
attagccagagttctgctaaacaacgaactggtcgtgctggtcgaacaggacctggcaaa
tgttaccggctttactcagaacttgattaccagtcgatggatttgcatcaagaacctgaa
attcgtaaagttcaccttggtattgcagttttgaggatccttgcattgggcattaagaat
gtgttggaatttgattttattgatgctcctagtggaaaggcagttaacatggccatcagg
aaccttgtgcagttaggcgctgttgtccgcagagatgatacttttgaattaactttggac
gggcattacttggttaagttgggtatggagccccgacttgggaagattattcttgaaagc
tgccgttatggtttgcgtatggaaggagttgctcttgccgctgttatggcaaatgcaagt
agcatattttgcagagttggtaccagtgatgacaaacaaaaatcagattgccttaaggta
caattctgccatcgtgatggagatctcttcacattgcttactgtgtacagggagtgggaa
agtgtatctccagataatagaaataagtggtgttggaacaatagtatcaatgccaaaact
atgagaagatgcaaagagacagtgctggagttggagaactgtttaaagcatgaacttagc
atcattatcccaacttactggcgttggagtccttatgttgttacagcccatgataaaagt
atgaagaagattttactttcttcactagcagataatgtcgccatgtactctggatatgat
cgtcttggttatgaggttgtttctagtggggaatacattcaactgcatccttcatgttca
ctgcaagtttatggtcaaaagccgaactgggttgtctttggtgaactcttatctatatca
agtcaatatctggtctgtgttactgctgttgactttgattgtttgtctgcctttagtcct
cctttatttgacctctcaaagatgcggagtaaaaaattgcatttgagggtgatcagcgga
tttggcagtactgttttaagaaggttctgtggaaagtcaaatactagcttgctttctctt
gtgtctcatgtacagaaaaattgcatggatgagcggataggtattgaagtcaatgtggat
aataatgagattctattatatgcctctatacaagacatacaaaaggtgtatggccttgtt
attgatgcattagaatatgaagtaaaattgttaagtaatgaatgcctggagaagtgcttg
tatcataggggacgggctggtgcttctcccccagtagcactttttggagctggtgcggaa
attaagcatatggaattggaaaatagaaatttgagtgtggatgtattcctctcaaatgca
aatcgtgcagatgataaggaggtcttggcattctttgaaaaatcagtgtctggggtgtgc
agttttcacagatttgcaggaagtggacagaatggtgaccatatggagaagtggggcagt
gtgacatttcttgctcctgaagccgctatgaaagcactagagttcaatgggtttgattta
tctggttcttcacttaagttgtcccctgctagatcatctgttggaggtagtaataaatta
tcatcatttgctgctttaaaagccaaagtcacttggccgcgaaggtacagcaaagggtat
gcggttgtcagatgtgaaaggaatgatgctatgtttgttgttgaagattgctttaatctg
ctgattgggggcaggctagttcattgcgagcctagcacaaaggacataaactgtgttatt
atcagaggactggatagagatacttctgaattagaaattcttgaagttctgcaaattgcc
acaagtaggagaattttggatgtatttctgatacgaggagatgctgtaaataatcctcct
cttggtgcttgtgaggaagcaattctcaaggaaattgctccattcatgcctaaccagggt
cccttgagcaattactgtcatgttcaggtcttttcccctgagccaaaggatactttcatg
aaggcttggatcacctttgatggaagtctacacctggaagctgcaaaagctctgcaacat
atccaagggaaggtacttgctggttgttttttatggcagaaaatgcagtgccagcaggtt
ttccacagttctgtatcatgccctgctcctgtttttccattcattgagaggcagctaaac
tctatactcaaaaggtttatgcatcgacctggtgtgcattgccgtttagaaaggaatgaa
aatggctcctatagagtgaagatatctgctaatgcaacaaagatagtggcagagttgagg
aggccactggagcagctaatgaatggaaagatggtaaatcatggcagcctcacccaagca
gttctgcagcatcttttctccagtgatggcagattacttatgaattcactgcaaaaggaa
actggaacttacattctcttcgataggcagaacctcaatgttaggatctttggtccagag
aacaaaattgctcttgctgaacacaagctcataaaatcccttttagctctccacgataac
aagcaaataaatatccctctgcaaggtgggtttatgcctcacgatcttatgaaaaaagta
gttgagaaatttggacctgacttgcatgggctaaaagagaagttccctgaggctacattt
atgcttaacacaaggcgtcatgtcatttcttttagtggtaagagggatctcaggccaagg
gtggaggatataattcatgattttgcacgatccctttgtgtcagtggagctgctgaccaa
cctgaatttgaagctactacctgtcctatttgcttgtgtgaagttgaggactgttaccag
cttgaagcatgcggacacaagttctgcaggtcttgcttggttgagcagttggagtcagca
atgagaagacatgatggtttccctgtacgctgtgcccgtgaaggttgtgggatgcacatt
tggctcattgatttgaagtctcttctgccatgtgaaatgttagaggaccttttcagggcc
tctttgggggcatttgttgcatctagtggtggcctttacaggttttgcccctcacctgac
tgtccttctgtttaccgtgtatcggacacggggatggttggcggtctatttgtatgtgga
gcatgctatgcagagacatgtactaggtgtcacttagagtatcacccatatgtgtcgtgt
gaaagatacaaagagttcaaggaggatcctgatttgtccttgaaggactggtgcaaggga
aaagagcatgttaagagctgtccagcatgcgggtacataattgagaaggtggacgggtgc
aaccacattgagtgcagatgtggcaagcatatctgctgggtctgctcagaatcctttagc
agcagtgatgagtgctatgggcacttgaggcttatacatctcactatcatatga

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