KEGG   Hevea brasiliensis (rubber tree): 110637938
Entry
110637938         CDS       T05150                                 
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
hbr  Hevea brasiliensis (rubber tree)
Pathway
hbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110637938
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hbr03041]
    110637938
Enzymes [BR:hbr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110637938
Spliceosome [BR:hbr03041]
 Complex C
  Other components
   Step II factors
    110637938
SSDB
Motif
Pfam: Helicase_C OB_NTP_bind IBR DEAD AAA_22 HA2_C AAA_19 zf-C3HC4_2 zf-RING_2 zf-RING_UBOX zf-C3HC4 HA2_N ABC_tran AAA_29 T2SSE Arc_MA
Other DBs
NCBI-GeneID: 110637938
NCBI-ProteinID: XP_021644020
Position
Unknown
AA seq 1717 aa
MTPFSNSYQRSRHRQFRPPPLSNHRPYYDHQRPSQKRLFVVKLLSNHHRGGCTPSIDSIV
SECYPKPCRFYIRTSGTLAASLLFEQQVDALDAVVSLWERRLAGEHLFTPVVDFSFDDDF
NERVRSLFQLYVEKLLQGESVEKLERKVNDLSVENEKVASFLRKARGLQAFSEAEARNKQ
LVEEMNRIMIRIEEFKCAVRCVTDYLDGKEVEELAVLGFKEGNSFNWSKIHSLLLRESRR
LEDGLPIYGNRSGILQQIKLQQVIVLIGETGSGKSTQLVQFLADSGVASSGSILCTQPRK
IAAIYLAKRVGEESIGCYEDNSIVCYPTYSSAQCLNSKVIYMTDHCLMQHLMKDKTLSGV
SCIIVDEAHERSLNTDLLLALIKELLIERHDLRLIIMSATVDASKLSEYFFGCGTFHVFG
RSFPVQINYVPGPSIGSSGPLPISIAPYVSDVVKMAMEIHQEEKEGAILAFLTSQLEVEW
ACEKFQSPSAISLALHGKLSHEEQSHVFQNYPGKRKVIFATNLAETSLTIPGVRYVVDSG
MVKESKFEPTSGMNVLRVSKISQSSAKQRTGRAGRTGPGKCYRLYSELDYQSMDLHQEPE
IRKVHLGIAVLRILALGIKNVLEFDFIDAPSGKAVNMAIRNLVQLGAVVRRDDTFELTLD
GHYLVKLGMEPRLGKIILESCRYGLRMEGVALAAVMANASSIFCRVGTSDDKQKSDCLKV
QFCHRDGDLFTLLTVYREWESVSPDNRNKWCWNNSINAKTMRRCKETVLELENCLKHELS
IIIPTYWRWSPYVVTAHDKSMKKILLSSLADNVAMYSGYDRLGYEVVSSGEYIQLHPSCS
LQVYGQKPNWVVFGELLSISSQYLVCVTAVDFDCLSAFSPPLFDLSKMRSKKLHLRVISG
FGSTVLRRFCGKSNTSLLSLVSHVQKNCMDERIGIEVNVDNNEILLYASIQDIQKVYGLV
IDALEYEVKLLSNECLEKCLYHRGRAGASPPVALFGAGAEIKHMELENRNLSVDVFLSNA
NRADDKEVLAFFEKSVSGVCSFHRFAGSGQNGDHMEKWGSVTFLAPEAAMKALEFNGFDL
SGSSLKLSPARSSVGGSNKLSSFAALKAKVTWPRRYSKGYAVVRCERNDAMFVVEDCFNL
LIGGRLVHCEPSTKDINCVIIRGLDRDTSELEILEVLQIATSRRILDVFLIRGDAVNNPP
LGACEEAILKEIAPFMPNQGPLSNYCHVQVFSPEPKDTFMKAWITFDGSLHLEAAKALQH
IQGKVLAGCFLWQKMQCQQVFHSSVSCPAPVFPFIERQLNSILKRFMHRPGVHCRLERNE
NGSYRVKISANATKIVAELRRPLEQLMNGKMVNHGSLTQAVLQHLFSSDGRLLMNSLQKE
TGTYILFDRQNLNVRIFGPENKIALAEHKLIKSLLALHDNKQINIPLQGGFMPHDLMKKV
VEKFGPDLHGLKEKFPEATFMLNTRRHVISFSGKRDLRPRVEDIIHDFARSLCVSGAADQ
PEFEATTCPICLCEVEDCYQLEACGHKFCRSCLVEQLESAMRRHDGFPVRCAREGCGMHI
WLIDLKSLLPCEMLEDLFRASLGAFVASSGGLYRFCPSPDCPSVYRVSDTGMVGGLFVCG
ACYAETCTRCHLEYHPYVSCERYKEFKEDPDLSLKDWCKGKEHVKSCPACGYIIEKVDGC
NHIECRCGKHICWVCSESFSSSDECYGHLRLIHLTII
NT seq 5154 nt   +upstreamnt  +downstreamnt
atgactcccttctccaacagctaccagcggtcccgccaccgccaattccgccctcctccg
ctttccaaccaccgtccttactatgaccaccaacgcccatcccaaaaacgtttatttgtt
gtcaaactcctttccaaccaccaccgtggtggctgtactccttcaattgactctattgtt
tcggaatgctaccccaagccttgcagattttacatcagaacctctggaacactcgccgcc
agcctcctttttgagcagcaggttgacgctctcgacgccgtcgtttccctttgggagcgc
cggcttgcaggggaacatttgtttactccggtggttgattttagtttcgacgatgatttt
aatgagagagtgagaagtttgttccaattgtatgtagagaagcttctgcaaggggagtct
gtcgagaaattggagaggaaggtaaatgatttgtctgttgagaatgagaaagttgcgagc
tttcttaggaaggctaggggtcttcaagcttttagtgaggctgaggcaaggaataagcag
ttggtggaggagatgaatcgaattatgattaggattgaggagtttaagtgtgcagtcagg
tgtgtaacggattatctggacgggaaggaggttgaggagttggcagttttggggtttaaa
gaagggaatagttttaattggagtaaaatacatagtttgctattgagagagtctaggcgt
cttgaagatgggttgcccatatatggtaataggagtgggattttgcagcaaataaaattg
cagcaggtgatagtcttgattggagagacaggttcaggaaagagtacgcagttggtacag
tttcttgctgattctggtgttgcttccagtggttcaattttgtgtactcagccccgcaaa
attgctgcaatttacctggcaaaaagggttggtgaagaaagcattggatgttatgaggat
aattcaattgtctgctatccaacatattcatctgcacagtgtcttaattcaaaggtaata
tatatgactgatcactgtctaatgcagcaccttatgaaagataagactttgtctggagtt
tcatgcattatcgtagatgaggcccatgaaagaagcttgaatactgatcttcttttggcc
ttgattaaagaattgcttattgagaggcatgacctaaggcttattataatgtctgcaaca
gttgatgccagcaaattgtcagaatacttctttggctgtggaacctttcatgtgtttggg
agaagctttcctgttcaaatcaattatgttcctggtccctccataggttcttctggtcca
ttacccatttctattgctccatatgtttctgatgttgttaagatggcaatggagatccat
caagaagagaaagagggggcgattcttgcgtttttgacttctcagctggaggtagaatgg
gcctgtgaaaagtttcagtctccctctgcaatctcattggcattacatggaaagctttcc
catgaagagcaaagtcacgttttccagaattatccagggaagagaaaagttatttttgct
accaatttggcagaaacatccttgactattcctggggtcaggtatgtggttgattctgga
atggttaaggaaagcaaatttgaacctacctctggcatgaatgtcctcagagtttccaag
attagccagagttctgctaaacaacgaactggtcgtgctggtcgaacaggacctggcaaa
tgttaccggctttactcagaacttgattaccagtcgatggatttgcatcaagaacctgaa
attcgtaaagttcaccttggtattgcagttttgaggatccttgcattgggcattaagaat
gtgttggaatttgattttattgatgctcctagtggaaaggcagttaacatggccatcagg
aaccttgtgcagttaggcgctgttgtccgcagagatgatacttttgaattaactttggac
gggcattacttggttaagttgggtatggagccccgacttgggaagattattcttgaaagc
tgccgttatggtttgcgtatggaaggagttgctcttgccgctgttatggcaaatgcaagt
agcatattttgcagagttggtaccagtgatgacaaacaaaaatcagattgccttaaggta
caattctgccatcgtgatggagatctcttcacattgcttactgtgtacagggagtgggaa
agtgtatctccagataatagaaataagtggtgttggaacaatagtatcaatgccaaaact
atgagaagatgcaaagagacagtgctggagttggagaactgtttaaagcatgaacttagc
atcattatcccaacttactggcgttggagtccttatgttgttacagcccatgataaaagt
atgaagaagattttactttcttcactagcagataatgtcgccatgtactctggatatgat
cgtcttggttatgaggttgtttctagtggggaatacattcaactgcatccttcatgttca
ctgcaagtttatggtcaaaagccgaactgggttgtctttggtgaactcttatctatatca
agtcaatatctggtctgtgttactgctgttgactttgattgtttgtctgcctttagtcct
cctttatttgacctctcaaagatgcggagtaaaaaattgcatttgagggtgatcagcgga
tttggcagtactgttttaagaaggttctgtggaaagtcaaatactagcttgctttctctt
gtgtctcatgtacagaaaaattgcatggatgagcggataggtattgaagtcaatgtggat
aataatgagattctattatatgcctctatacaagacatacaaaaggtgtatggccttgtt
attgatgcattagaatatgaagtaaaattgttaagtaatgaatgcctggagaagtgcttg
tatcataggggacgggctggtgcttctcccccagtagcactttttggagctggtgcggaa
attaagcatatggaattggaaaatagaaatttgagtgtggatgtattcctctcaaatgca
aatcgtgcagatgataaggaggtcttggcattctttgaaaaatcagtgtctggggtgtgc
agttttcacagatttgcaggaagtggacagaatggtgaccatatggagaagtggggcagt
gtgacatttcttgctcctgaagccgctatgaaagcactagagttcaatgggtttgattta
tctggttcttcacttaagttgtcccctgctagatcatctgttggaggtagtaataaatta
tcatcatttgctgctttaaaagccaaagtcacttggccgcgaaggtacagcaaagggtat
gcggttgtcagatgtgaaaggaatgatgctatgtttgttgttgaagattgctttaatctg
ctgattgggggcaggctagttcattgcgagcctagcacaaaggacataaactgtgttatt
atcagaggactggatagagatacttctgaattagaaattcttgaagttctgcaaattgcc
acaagtaggagaattttggatgtatttctgatacgaggagatgctgtaaataatcctcct
cttggtgcttgtgaggaagcaattctcaaggaaattgctccattcatgcctaaccagggt
cccttgagcaattactgtcatgttcaggtcttttcccctgagccaaaggatactttcatg
aaggcttggatcacctttgatggaagtctacacctggaagctgcaaaagctctgcaacat
atccaagggaaggtacttgctggttgttttttatggcagaaaatgcagtgccagcaggtt
ttccacagttctgtatcatgccctgctcctgtttttccattcattgagaggcagctaaac
tctatactcaaaaggtttatgcatcgacctggtgtgcattgccgtttagaaaggaatgaa
aatggctcctatagagtgaagatatctgctaatgcaacaaagatagtggcagagttgagg
aggccactggagcagctaatgaatggaaagatggtaaatcatggcagcctcacccaagca
gttctgcagcatcttttctccagtgatggcagattacttatgaattcactgcaaaaggaa
actggaacttacattctcttcgataggcagaacctcaatgttaggatctttggtccagag
aacaaaattgctcttgctgaacacaagctcataaaatcccttttagctctccacgataac
aagcaaataaatatccctctgcaaggtgggtttatgcctcacgatcttatgaaaaaagta
gttgagaaatttggacctgacttgcatgggctaaaagagaagttccctgaggctacattt
atgcttaacacaaggcgtcatgtcatttcttttagtggtaagagggatctcaggccaagg
gtggaggatataattcatgattttgcacgatccctttgtgtcagtggagctgctgaccaa
cctgaatttgaagctactacctgtcctatttgcttgtgtgaagttgaggactgttaccag
cttgaagcatgcggacacaagttctgcaggtcttgcttggttgagcagttggagtcagca
atgagaagacatgatggtttccctgtacgctgtgcccgtgaaggttgtgggatgcacatt
tggctcattgatttgaagtctcttctgccatgtgaaatgttagaggaccttttcagggcc
tctttgggggcatttgttgcatctagtggtggcctttacaggttttgcccctcacctgac
tgtccttctgtttaccgtgtatcggacacggggatggttggcggtctatttgtatgtgga
gcatgctatgcagagacatgtactaggtgtcacttagagtatcacccatatgtgtcgtgt
gaaagatacaaagagttcaaggaggatcctgatttgtccttgaaggactggtgcaaggga
aaagagcatgttaagagctgtccagcatgcgggtacataattgagaaggtggacgggtgc
aaccacattgagtgcagatgtggcaagcatatctgctgggtctgctcagaatcctttagc
agcagtgatgagtgctatgggcacttgaggcttatacatctcactatcatatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (16)   
   Pfam (16)   
All databases (29)   

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