KEGG   Haloferax gibbonsii: ABY42_00140
Entry
ABY42_00140       CDS       T04025                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
hgi  Haloferax gibbonsii
Pathway
hgi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hgi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    ABY42_00140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hgi03400]
    ABY42_00140
DNA repair and recombination proteins [BR:hgi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ABY42_00140
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      ABY42_00140
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_22 UB2H DUF87 HEM4
Other DBs
NCBI-ProteinID: AKU06227
UniProt: A0A0K1INY3
Position
28542..30638
AA seq 698 aa
MSESGPLSADRPDADREFRVDAPFDPAGDQPEAIEALARGFREGADVQTLLGVTGSGKTN
TVSWVVEEIQKPTLVLAHNKTLAAQLYEEFKSLFPDNAVEYFVSYYDYYQPEAYIEQTDT
YIDKDMSINEEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPKNYADMSLRLEVGQQM
DRDELLRGLVDLNYERNDVDFRQGTFRVRGDTVEVFPMYGRYAVRIEFWGDEIDRMLKLD
PLEGEVKSSEPAVLVYPAEHYSIPEEQLEGAISEIEELMEQRVKHFQRQGDLVAAQRIEE
RTTFDIEMLRETGHCSGIENYSVHLSDREPGDAPYTLLDYFPDDFLTVIDESHVTLPQIK
GQYAGDKSRKDSLVENGFRLPTAYDNRPLTFEEFEETVGQALFVSATPGDYEREHSDQIV
EQIVRPTHLVDPKVEVTEATGQVDDLMARIDERIDRDERVLVTTLTKRMAEDLTEYLEEA
GVDVAYMHDETDTLERHELIRSLRLGDIDVLVGINLLREGLDIPEVSLVAILDADQQGFL
RSETTLVQTMGRAARNVNGEVVLYADEMTDAMEAAISETQRRRRIQQEFNEEHGYTPTTI
EKEVGETNLPGSKTDTRGVSGDEPADADEAVEQIAFLEDRMQEAADNLEFELAADIRDRI
QNLRREFDVDALEDGVAPEYPDEHDGEADDGLTPPDEF
NT seq 2097 nt   +upstreamnt  +downstreamnt
atgagcgagtccggtcccctgtccgccgacagacccgacgcagaccgcgaattccgcgtc
gacgcccccttcgaccccgcgggcgaccaacccgaggcaatcgaggcgctggcccgcggc
ttccgcgagggtgccgacgtgcagaccctgctcggtgtcaccggttccggcaagacaaac
accgtctcgtgggtggtcgaggagattcagaagccgacgctcgtcctcgcgcacaacaag
acgctcgccgcccagttgtacgaggagttcaagagtctcttccccgacaacgcggtcgag
tacttcgtctcctactacgactactaccagcccgaggcgtacatcgagcagaccgacacc
tacatcgacaaggacatgtcgataaacgaggaaatcgaccggctccgccactccgcgacc
cggtcgcttctcacccgcgacgacgttatcgtcgtcgcctcggtgtcggctatctacggc
ctcggcgacccgaagaactacgccgatatgtccctccgactggaggtcggccagcagatg
gaccgcgacgaactcctccgtggtctcgtcgacctcaactacgagcgcaacgacgtggac
ttccggcaagggacgttccgcgtccgcggcgacaccgtcgaggtgttcccgatgtacggc
cgctacgccgtccgcatcgagttctggggcgacgaaatcgaccggatgctgaagctcgac
ccgctggagggcgaggtcaagtcgtccgagccggcggtcctcgtctatccggcggaacac
tactccatccccgaagagcaactcgaaggagccatctcggaaatcgaggagctgatggaa
cagcgggtgaagcacttccagcgacagggcgacctcgtggccgcccagcgcatcgaagag
cgcaccaccttcgacatcgagatgctccgcgagacgggccactgctccggcatcgagaac
tactcggtccacctctcggaccgcgagccgggcgacgcgccttacaccctcctcgactac
ttccccgacgacttcctcaccgtcatcgacgagtcgcacgtcacgctcccgcagattaag
ggccagtacgccggtgacaagtcccgaaaggactcgctcgtcgaaaacggcttccgcctg
ccgacggcctacgacaaccgcccgctcaccttcgaggagttcgaagagaccgtcgggcag
gcgcttttcgtctccgcgacccccggcgactacgagcgcgagcactccgaccaaatcgtc
gagcaaatcgtccggccgacccacctcgtggacccgaaggtcgaggtgacggaggcgacc
gggcaggtcgacgacctgatggcccgcatcgacgagcgcatcgaccgcgacgagcgcgtg
ctcgtcacgacgctcacgaagcggatggccgaggacctcaccgagtacctcgaagaggcc
ggcgtcgacgtggcctacatgcacgacgagaccgacacgctcgaacgccacgaactcatc
cggtcgctccgcctcggcgatatcgacgtgctcgtcggcatcaaccttctccgcgagggc
ctcgacatccccgaagtctcgctcgtcgccatcctcgacgccgaccagcagggcttcctg
cgctccgagaccacgctcgtccagacgatgggccgcgccgcccgcaacgtcaacggcgag
gtcgtgctctacgccgacgagatgacggacgcgatggaggccgccatctccgagacgcag
cgccgccgccgcatccaacaggagttcaacgaggaacacggctacacgccgacgaccatc
gaaaaggaggtcggcgagacgaacctgccggggagcaagaccgacacccgcggcgtctcc
ggcgacgaacccgccgacgccgacgaggcggtagaacagatcgccttcctcgaagaccgg
atgcaggaggccgccgacaacctcgaattcgaactcgccgccgacatccgcgaccgcatc
cagaacctccgccgagagttcgacgtggacgccctcgaagacggcgtcgcgcccgagtat
cccgacgaacacgacggcgaggccgacgacggcctgacgcccccggacgagttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

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