KEGG   Hydra vulgaris (swiftwater hydra): 100212013
Entry
100212013         CDS       T01080                                 
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
hmg  Hydra vulgaris (swiftwater hydra)
Pathway
hmg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hmg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100212013
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hmg03041]
    100212013
   03009 Ribosome biogenesis [BR:hmg03009]
    100212013
Enzymes [BR:hmg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100212013
Spliceosome [BR:hmg03041]
 Complex A
  U2 snRNP components
   U2 related factors
    100212013
 Complex B
    100212013
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    100212013
Ribosome biogenesis [BR:hmg03009]
 Eukaryotic type
  90S particles
   Helicases
    100212013
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 nSTAND3 ResIII SRP54 Flavi_DEAD ABC_tran Microtub_bd AAA_29 T2SSE TsaE
Other DBs
NCBI-GeneID: 100212013
NCBI-ProteinID: XP_047124124
Position
15:28912967..28943262
AA seq 724 aa
MSDRKRRLDVDGSSSKRSREEEMRKQVLSNSLQLPPQMAITSLKETCPKINPFTQKPFSE
RFYAILKRRLQLPVWEYRDEFLKITKENQCIVLVGETGSGKTTQIPQWCLDLVSMGRRKH
VCCTQPRRVAAMSVAQRVADEMDVTLGQEVGYSIRFEDCSSARTVMKYMTDGMLLREAMT
DPLLDRYGVILLDEAHERTLATDILMGLIKEVIKQRPDLKVIIMSATLDAGKFQDYFDNA
PLLTIPGRTFPVEIFYTPEPERDYLEAAIRTVVQIHLCEEQDGDVLLFLTGQEEIDEACK
RIKKEIDNLGPEVGEMKIIPLYSTLPPQLQQRIFESAPPTKPNGGIGRKVVVSTNIAETS
LTIDGVVFVIDPGFSKQKVYNPRIRVESLLVSAISKASAQQRAGRAGRTRPGKCFRLYTE
KAYKSEMQSNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLQ
ALDDDGDLTELGSMMAEFPLDPQLAKMVIASTDHNCSNEALSIVAMLSVQQIFMRPNDAK
KAADEAKMKFAHIDGDHLTLLNVYHAFKQNHEEAQWCYDNFLNVRSLKSADNVRQQLARI
MDRFSLKRTSTDFNSRDYYVNIRKALVTGFFMQIAHLEKTGHYLTVKDNQVVQLHPSTCL
DHKPEWVLYNEFVLTTKNYIRTCTDVKAEWLIQLARQYYDLRNFPNCEAKKVLERVVERM
GKDK
NT seq 2175 nt   +upstreamnt  +downstreamnt
atgtctgatcgtaaaagaagactagatgttgacggatcttcgtcaaaacgcagcagagaa
gaggaaatgcgaaaacaggtcttatcgaacagtctccaacttcctcctcaaatggcaatt
acaagtcttaaagaaacatgcccaaaaataaatccgtttacacaaaaaccatttagcgaa
cgtttttatgctatacttaaacgcagactacagcttccagtatgggaatatagggatgaa
tttttaaagattacaaaagaaaatcagtgtattgtcttggttggtgaaactggcagtgga
aaaacaactcagattcctcagtggtgccttgatcttgtttcaatgggtcgacgtaaacat
gtttgttgcacacagccacgcagagttgcagcaatgagtgttgctcagagagtagctgat
gagatggatgttactcttggacaagaagttggctattcaattcgatttgaagattgctca
agtgctaggacagtaatgaaatatatgactgatggtatgttgcttcgagaagctatgact
gaccctctattagacagatatggtgtaatattactcgacgaagcacatgaaaggacatta
gctactgatattttgatgggcttaatcaaagaggttataaaacaaagaccagatttaaag
gtgattattatgtctgcaaccctggatgctggaaaatttcaagattattttgataatgct
cctttgctgaccattccaggtcgaacatttcctgtcgaaatcttctatacacctgaacca
gagcgagattatcttgaggcagctataagaactgttgtacagatccatctttgtgaagaa
caagatggggatgttttactttttcttactggacaagaagaaattgatgaagcgtgtaaa
cgcatcaaaaaggaaattgataatcttggaccagaagttggagaaatgaaaattatacct
ttatattccactctacctccacaacttcaacagcgtatatttgaaagtgctcctcctaca
aagcctaatggtggaattggtcgtaaagtggtggtttcaacaaatattgctgaaacatca
ttgacaatcgatggtgtagtttttgtaatagatcctggattttcaaaacaaaaagtgtat
aatcctcgtattcgtgtggagtctcttcttgtatccgctatttctaaggctagtgctcaa
caacgagctggacgtgcagggagaacaagacctggaaaatgtttcagattatacactgag
aaggcatataaatctgaaatgcaaagtaatacatatcctgagattttgcgatcgaatctg
ggtactgttgtgttgcaacttaaaaaattaggaatagatgatttagtgcattttgacttc
atggatcctcctgcaccagaaacacttatgagagcacttgagttattaaattatttgcaa
gcccttgatgatgatggtgatcttacagaattaggttctatgatggctgagtttccgtta
gatccacagctagcaaagatggttattgcaagtactgatcataattgttcaaatgaagct
ctttcaattgtggccatgttatcagtccaacagatttttatgcgtccaaatgatgcaaag
aaagctgcagatgaagccaaaatgaagtttgctcatatcgatggtgatcatctaacatta
ctcaatgtttaccatgcttttaaacaaaatcacgaagaagcccaatggtgttatgataat
tttttgaatgttcggtctcttaaatctgcagataatgttcgtcaacagttggcgcgaatc
atggatagatttagtttaaaacgaactagtacagacttcaacagtagggattactatgtt
aacataagaaaagctcttgtaactggattttttatgcagattgctcatttggaaaagact
ggtcattatttgacagtgaaagacaaccaggtagttcaactgcatccttctacttgtctt
gatcacaaacctgaatgggttctttataatgagtttgtgctcacaacaaaaaactatatt
cgcacatgtacagatgtcaaagcagaatggttgattcagttggcacgtcagtattatgat
cttcgaaatttcccgaactgtgaagcaaaaaaggtcttagagcgtgttgttgaaagaatg
ggaaaagataaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (145)   
   KEGG ORTHOLOGY (1)   
   RefGene (141)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (16)   
   Pfam (16)   
All databases (173)   

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