KEGG T01103: Hoch

Haliangium ochraceum: Hoch_3637

Entry

Hoch_3637         CDS       T01103

Name

(GenBank) excinuclease ABC, A subunit

K03701

excinuclease ABC subunit A

Organism

hoh Haliangium ochraceum

Pathway

hoh03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:hoh00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Hoch_3637
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hoh03400]
    Hoch_3637
DNA repair and recombination proteins [BR:hoh03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Hoch_3637
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Hoch_3637

SSDB

Motif

Other DBs

NCBI-ProteinID:

ACY16139

UniProt:

D0LX97

Position

complement(5003710..5009253)

AA seq 1847 aa
MRPIELRGARQNNLCSVDLTLEPGTLVAVTGPSGAGKSSLAFGTLYAEGQRRYVESFSAY
ARQFLERLARPEVDALDPVPAAVAVDRSAPVRTSRSTVGTMTELCDYAKSLWAHSARLCC
PGCGAEVQPDEPGAAAESVIEAHSGARVAVSFAVRASSADALALARDELRAQGYGRVLAG
GALAKLDELDDDALAAAAAEDNAHHGGGALAVIADRSTATARNRRRLSESLAAAMHRGGG
RARVHVFDAEGGLGVTLRFSDRLHCADCERDFRPATPGLFSFNSPIGACPSCRGFGRVIG
IDVRKVLPDPSLSLSAGAIRPWRGKKYAWERRELARHAKRAGIPWSAPVSELSAEQLAWL
VEGEPGGYEGGGWWGLRGWFSWLESKTYKLHVRVLLARYRAYDECPACAGARLRPEALWW
RVRGLDMAGFLALSVADARQFLLDFDRDDDGDGHGDGAAAGSARARGARGDGRERDDAAA
LLRAECLRRLSTLADVGLAYLTLDRASRTLSGGETQRVALTGALGASLAGALIVMDEPSV
GLHPHDVGRLAEVVQRLAAADNTVLVVEHDWALIQRADRVVELGPGAGREGGRVVFDGAP
EELLSSDTATGRAHRGARAAALVRREPSAWIELRAATGHNLRGVDVAIPRGLLTCVTGVS
GSGKSSLILGTLAPAVIAALGGEVEEPALPHAALAGADALADAVVVDQSPLGRTARGNPA
TYVKAWDWIRGALAKTEMAAARGLSAGAFSFNVPGGRCESCKGEGAETVEMQFLADVSFS
CPDCGGKRFVGPVLEVRYQGKNVVDILEMSVDEALACFSSRTLTRRLQPVVDVGLGYLRL
GQPLNTLSGGEAQRLKLAEALARTKAGGLVILDEPTAGLHAQDVVPLRRSLEALVARGDT
VVVVEHDMALAAHADWIVDLGPGAGAHGGTIVASGTPEQVAAAQGSSTAPHLAAALAAHS
SSTRTKSSPAGRASASVGASRAAQPGPVWQRAPIAGADIEILGAREHNLRDLSLRLPREQ
LVVVTGPSGSGKSTLAFDVLYAEGQRRYLETLSPYARQYMPQLPRPAVDRVLGVPPSVAL
EQRVHRGGAGSTVATITEVAHYLRVMYARAGLLHCPDCEVAIAPRAPELLARDLAALARP
DGDGDGDGDAWLVMAPVVRGRKGLHRELLARAREDGIERARIDGAFTALRAGMKLDRYRE
HDVELVIAELPAEDAAMPAALGRAAALSGGSVRVRRGQQELLLSTQRACPSCGTGFPELD
PRMFSFHTRQGACPACEGRGVIEPATRRKRGKRAAAEAPPKTCPDCAGTRLSPLARAVTV
AGWSIAELFGRSVLEAGRALADMQLDGRDATIAAVPLAEARARLSFLASVGVGYLELDRP
AATLSGGETQRVRLAAQLGSGLTGILYVLDEPTIGLHPRDTGVLLDAMRALVERGNSLVV
VEHDPDTIRAADFLVDIGPGGGHHGGRLLACGAAAEVLAEDRAPTAAALRRPPPVPAQRR
VPDDAAQLELRGARRHNLRDLDLRLPLGCLVAVTGVSGSGKSTLIREVLLEAVGDALARP
ARTPPRSQRAYRELRGAEALRRAVEIDQSPIGRTSRSVPATYVGVWNHIRALLANTPEAR
ARGYGAARFSFNTAEGRCPTCEGQGRLKAEMAFLPDVEMDCEACAGMRFDPDTLDITWRG
RNAGEILALEIGEAAEVFASVSKVARPLALLDELGLGYLKLGQPSSTLSGGEAQRLKLVS
ELGARSPGGTLYVMDEPTTGLHRDDVVRLLALLDRLVERGDTVVVIEHHTDVMLAADWIV
DLGPEGGAEGGRVLVSGPPEDVAACAESHTGAVLAAELQRSAHGSDT

NT seq 5544 nt +upstreamnt +downstreamnt
atgcgacccatcgagttacgcggcgcccgccagaacaacctgtgcagcgtcgacctcacc
ctggagccgggcacgctggtggccgtgaccgggccctcgggcgcgggcaagtcctcgctg
gcctttggcacgctgtacgccgagggtcagcgccgctacgtcgagagttttagcgcctac
gcgcggcagttcctcgagcgcctggcgcggcccgaggtcgacgcgctcgacccggtgccc
gcggccgtggccgtggatcgcagcgcgccggtgcgcaccagccgctcgaccgtgggcacg
atgaccgagctgtgcgactacgcgaagtcgctgtgggcgcacagcgcgcgcctctgctgc
ccgggctgcggcgccgaggtgcagccggacgagcccggagccgcggccgagagcgtgatc
gaggcgcattcgggcgcgcgcgtggccgtgagcttcgcggtccgcgccagctcggccgac
gccctggcgctggcccgcgacgagctgcgcgcgcagggctacggccgggtgctggccggc
ggcgcgctggccaagctcgacgagctcgacgacgacgcgctggccgcggccgcggccgag
gacaacgcgcatcacggcggcggcgcgctggccgtgatcgccgaccggagcacggccacg
gcgcgcaatcgccggcgcctgagcgagtcgctggccgccgccatgcaccgcggcggcggc
cgcgcccgcgtgcacgtattcgacgccgagggcggcctcggcgtcaccttgcgcttctcc
gaccggctgcactgcgccgactgcgagcgcgacttccgcccggccacgcccgggctgttc
tcgttcaacagccccatcggcgcgtgcccgagctgccgcggcttcggccgcgtcatcggc
atcgatgtccgcaaggtcctgcccgatccttcgctgtctctgagcgcgggcgccatccgc
ccgtggcgcggcaagaagtacgcgtgggagcggcgcgagctggccaggcacgccaagcgc
gccggcatcccgtggtccgcgccggtgagcgagctgagcgccgagcagctcgcctggctg
gtcgagggcgagcccggcggctacgagggcggcggctggtggggcctgcgcggctggttc
tcgtggctcgagagcaagacctacaagctgcacgtgcgggtgctcctggcccgctatcgc
gcctacgacgagtgccccgcgtgcgcgggcgcgcggctgcgccccgaggcgctgtggtgg
cgcgtgcgcgggctcgatatggcaggctttttggcgctgtcggtggccgatgcgcggcag
ttcctgctcgacttcgatcgcgatgacgacggcgacggccacggcgacggcgcagcggct
ggctctgcgcgcgctcgcggcgcccgcggtgatggtcgcgaacgcgatgacgccgccgcg
ctgctgcgcgccgagtgtctgcgccggctgagcacgctggccgatgtcggcctggcctat
ctcaccctcgaccgcgcctcgcgcacgctctcgggcggcgagacccagcgcgtggcgctc
acgggcgctctgggcgcgtcgctggccggcgcgttgatcgtcatggacgagccctcggtg
ggcctgcacccgcacgatgtcggacgcctggccgaggtcgtccagcgcctggccgcggcc
gacaacaccgtgctggtggtcgaacacgattgggcattgatccagcgcgccgaccgcgtg
gtcgagctcggacccggcgccggtcgcgagggcggccgcgtggtcttcgacggcgccccc
gaggagctgctgagcagtgacaccgccaccggccgcgcccaccgcggcgcgcgcgcggcc
gccttggtgcggcgcgagccgagcgcgtggatcgagctgcgcgcggccaccggccacaac
ctgcgcggcgtcgatgtcgccatcccgcgcgggctgctcacctgcgtcaccggcgtgagc
ggctcgggcaagagctcgctgatcctgggcacgctggccccggccgtgatcgcggccctg
ggcggcgaggtcgaagagcccgccctgccccacgccgcgctcgcgggcgccgacgcgctg
gccgacgccgtggtcgtcgatcaatcgccgctggggcgtacggcgcgcggcaacccggcg
acttacgtgaaggcctgggactggatccggggcgcgctggccaagaccgagatggccgcg
gcccgggggctgagcgcgggcgcgttctcgttcaatgtgcccggcggccgctgcgagtcg
tgcaagggcgaaggcgccgagaccgtggagatgcagtttctggccgatgtctcgttctcg
tgcccggactgcggcggcaagcgcttcgtcggcccggtgctcgaggtccgctaccagggc
aagaacgtggtcgacatcctcgagatgagcgtcgatgaggccctggcctgcttctcctcg
cgcacgctcacgcgccgcctgcagccggtggtcgatgtcggcctgggctatctgcgcctg
ggccagccgctcaacacgctctcgggcggcgaggcgcagcggctcaagctggccgaggcg
ctagcgcgcaccaaggccggcgggctggtcatcctcgacgagcccacggccgggctgcac
gcccaggacgtggtgccgctgcggcgctcgctcgaggcgctggtggcgcgcggcgacacc
gtggtcgtggtcgagcacgacatggcgctggccgcgcacgccgattggatcgtcgacctc
gggcccggcgccggcgcccacggcggcaccatcgtcgcgagcgggacccccgagcaggtg
gccgcggcgcagggctcgagcacggcgccgcacttggccgcggcgctggccgcacacagt
tcgtccacgcggacgaaatcgtccccggccggccgcgcgtcggcgtcggtgggcgcgagt
cgcgcggcgcagcccgggccggtgtggcagcgcgcgcccatcgcgggcgccgatatcgag
attctcggcgcccgcgagcacaacctgcgcgatctcagcctgcggctgccgcgcgagcag
ctcgtcgtggtcaccgggcccagcggcagcggcaagagcaccctggccttcgacgtgctc
tacgccgagggccagcgccgctatctcgagaccctgtcgccgtacgcgcgccagtacatg
ccgcagttgccgcggcccgcggtcgatcgcgtgctcggcgtgccgcccagcgtggccctc
gagcagcgcgtgcaccgcggcggcgcgggctcgaccgtggccaccatcaccgaggtcgcc
cactacctgcgggtgatgtacgcgcgcgccgggctgctgcactgtcccgactgtgaggtg
gccatcgcgccgcgcgcgcccgagctgctggcgcgcgatctcgcggcgctggcccggccc
gacggcgacggcgacggcgacggcgacgcctggctggtgatggcgcccgtggtgcgcggc
cgcaagggcctgcaccgcgagctgctggcgcgggcgcgcgaagacggcatcgagcgcgcg
cgcatcgacggcgcgttcacggcgctgcgcgcgggcatgaagctcgaccgctaccgcgag
cacgatgtcgagctggtcatcgccgagttgccggccgaggacgccgccatgccggctgcc
ctgggtcgcgccgcggcgctcagcggcggcagcgtgcgcgtgcgccgcggccagcaggag
ctgctgctgtcgacccagcgcgcgtgcccctcgtgcggcaccggcttccccgagctcgac
ccgcgcatgttctcctttcacacccgccagggcgcctgccccgcgtgcgagggccgcggc
gtcatcgagccggccacgcgccgcaagcgcggcaaacgcgcggccgccgaggcgccgccc
aagacctgcccggactgcgccggcacccggctctcgcccctggcccgggccgtgaccgtg
gccggctggtcgatcgccgagctcttcggccgcagcgtgctcgaggccggccgcgcgctc
gccgacatgcagctcgacggtcgcgacgccaccatcgccgccgtgcccctggccgaggcc
cgcgcccggctgtcgtttctggcctcggtgggcgtcggctacctcgagctcgaccgtccc
gcggccacgctctcgggcggcgagacccagcgcgtgcgcctggccgcccagctcggcagc
ggcctcaccggcatcctgtatgtgctcgacgagcccaccatcggcctgcacccgcgcgac
accggcgtgctgctggacgcgatgcgcgcgctggtcgagcgcggcaactcgctggtggtg
gtcgagcacgatcccgacaccatccgcgccgccgactttctcgtcgacatcggcccgggc
ggcggccaccacggcggccgcctgctggcctgcggcgccgccgccgaggtgctggccgag
gaccgcgcgccgaccgcggccgcgctgcgccgcccgccgcccgtgccggcccagcggcgc
gtgcccgacgacgcggcccagctcgagctgcgcggcgcccggcgtcacaacctgcgcgat
ctcgacctgcgcctgccgctcggctgcctggtcgcggtcaccggcgtgagcggctcgggc
aagtccaccctgatccgcgaggtgctgctcgaggccgtgggcgacgccctggcccggccc
gcgcgcactccacccaggagccagcgcgcctaccgcgagctgcgtggcgccgaggcgctg
cggcgcgcggtggagatcgaccagagccccatcggccgcacctcgcgctcggtgccggcg
acctatgtcggcgtgtggaaccacatccgcgccctgctcgcgaacacgcccgaggcgcgc
gcgcgcggctacggggccgcgcgcttctcattcaacaccgccgagggccgctgccccacc
tgcgagggccagggccggctcaaggccgagatggcgtttttgcccgacgtcgagatggac
tgcgaggcctgcgccggcatgcgcttcgaccccgacaccctcgacatcacctggcgcggc
cgcaacgccggcgagatcctggcgctcgagatcggcgaggccgccgaggtcttcgcctcg
gtgtccaaggtcgcgcggcccctggccctgctcgacgagctcggcctcggctacctcaag
ctgggccagccctcgagcacgctctcgggcggcgaggcccagcgcctcaagctggtctcc
gagctgggcgcgcgcagcccgggcggcaccctctatgtcatggacgagcccaccaccggc
ctgcaccgcgacgatgtcgtccgcctgctggccttgctcgaccgattggtcgaacgcggc
gacaccgtggtggtgatcgaacatcacaccgacgtgatgctggccgccgactggatcgtc
gatctcggccccgagggcggcgccgagggcggccgcgtgctggtgagcggcccgcccgag
gacgttgccgcctgcgccgagagccacaccggcgccgtgctggccgccgaactgcagcgc
agtgcgcacggatctgacacatga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (23)   
   Pfam (23)   
All databases (78)   

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