KEGG   Hydrogenophaga sp. PBC: Q5W_00260
Entry
Q5W_00260         CDS       T04491                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
hyb  Hydrogenophaga sp. PBC
Pathway
hyb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hyb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Q5W_00260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hyb03400]
    Q5W_00260
DNA repair and recombination proteins [BR:hyb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Q5W_00260
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Q5W_00260
SSDB
Motif
Pfam: ABC_tran UvrA_inter AAA_21 AAA_29 SMC_N AAA_16 nSTAND1 RsgA_GTPase Viral_helicase1 AAA_22 AAA_23 AAA_25 nSTAND3 AAA_33 DnaJ_CXXCXGXG AAA_18 NACHT UvrA_DNA-bind DUF4350 cobW SbcC_Walker_B RNA12 BCA_ABC_TP_C Anti-TRAP
Other DBs
NCBI-ProteinID: AOS77518
Position
51058..56877
AA seq 1939 aa
MSDDHRPDHAHQAEPDERAADDGGAEGLIRIRGARQHNLKGLDLDIRTGELTVVTGPSGS
GKSSLVFDTLFAEGQRRYVETFSAYARQFLDRMDKPAVDRVEGVPPAIAIDQTNPVRSSR
STVGTMTELNDHLKLLFARGAELFDRETALPVRHDSPETIAAELRRRSEAQGDPRLVLTF
PVELPANTTPEEIEQWLSASGYTRVQAERTVQREVKDEAPAKGKKAKPAIEAVKLLDVVA
DRFRIAGAEPARVMEAIETGLKRGGGRLTVYALKEEGEPEIWKFSTGLHCPESDIRYTEP
TPSMFSFNSPVGACDTCRGFGRVIGVDYGLVIPNEKLTLRNGAIKVFQTPAWKECQDDLM
RHAEAAGIPRDTPWAKLTPEQQAWVKNGSPQWNGKWNQHWYGVGRFFEYLESKAYKMHIR
VLLSKYRSYTECPVCRGARLKTDSLLWRVGTRAQADAVLEPAQRYLPAGVQWSRAQLEAL
PGLCLHDLMLMPLTDLRRFFDSIAPAQAGSSGEQQALKLLLEEINTRIRYLCEVGIGYLT
LDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMARIVDAMKRLRDAGN
TLVVVEHDPAVMLAADRLIDMGPGPGERGGQIVFDGTPEQIRAADTLTGAYLGARKTIGM
GFKRAVTDSTPRLILEGASEHNLKHVSVEFPLQRLVVVTGVSGSGKSTLIQDVLAPALMR
HFGQSTESPGAHDRLLGAEQLADVVFVDQSPIGKTARSNPVSYVGAWDAIRALFADAPLS
RQRSYTPAKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGKRYRPEILEVKID
RGQRMLNVADVLELTVNEAAQLFAHDREVIRALQPIVDVGLEYVKLGQPVPTLSGGEAQR
LKLAGFLAEAAKSASSSRQPLSRKGTLFLFDEPTTGLHFDDIAKLMRSLRKLLDAGHSLV
VIEHNLDVIRAADWLIDLGPEGGAGGGTVVAEGPPEQVREHPTSHTALALRDYAVAMDRV
YAVNERPAAPYRARAARRGPHDEAIRIVNAKEHNLKQLSVNIPRGKFNVISGVSGSGKST
LAFDILFNEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVG
TTTEVWHFLRLLYVKLGTQHCVHDGAAVKPQSADSIAAAILRKHAGRHVGLLAPLVVNRK
GVYTELADWARPRGHSHLRVDGEFLPTTGFPRIDRFKEHTIELPVADFVVDPANEGQLRS
ELAKALEHGKGILHLLHPLDGLKDAIADGRSTREIGAVEVFSTARACPVCSTSYPELDPR
LFSYNSKHGWCPDCVGTGTQLSREQRKALDDSVRDDDQKGREQSFAEPEVEGVGDEICPT
CEGTRLNAQARAVRFGGVAITDIARLSVSEVRQWVRGLMASEGLTGREADIARDLLPEIE
SRLAFLEQVGLNYLTLDRGAPTLSGGEAQRIRLAAQLGSHLQGVCYVLDEPTIGLHPRDN
QILLDALHQLGAQGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRVVAQGSVADLSANA
ESVTGRYLLHAMKHPLQARRTVRADEPELELRGAALHNLQQLDVKVPLKRLVVVTGVSGS
GKSTLARDVLLTNVAEAVSMRSTAAGKKAWDKGERPAWSGCERLIGSEVVDRVLEVDQTP
IGKTPRSCPATYIGFWDTVRKLFADTLEAKARGYGPGRFSFNTGEGRCPSCEGQGVRTIE
MSFLPDVKVPCETCHGARFNPETLAVTWKGKSIGDVLQMEVDEAVDFFASMPAISHPLQL
LKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDEVGRRGQKAPHTLYVLDEPTVGL
HMADVEKLIRVLHRLVDGGHSVVVIEHDLDVMAEADWIIDLGPEGGSGGGRVVAAAAPEA
VVAAGTHTGRVLAPVLARR
NT seq 5820 nt   +upstreamnt  +downstreamnt
atgtccgacgatcaccgccccgaccacgcccaccaggccgaacccgatgaacgggcggcc
gacgacgggggcgccgagggcctgatccgcatccgcggtgcgcgccagcacaacctaaag
ggcctggacctggacatccgcaccggcgagttgaccgtggtgacggggcccagcggctcg
ggcaagtccagcctggtgttcgacaccctgttcgccgagggccagcggcgctacgtcgag
accttcagcgcttacgcacggcagttcctggaccgcatggacaagccggccgtggaccgt
gtggagggcgtgccgcccgcgatcgccatcgaccagaccaacccggtgcggtcctcgcgc
tccaccgtgggcaccatgacggagctcaacgaccacctgaagctgctgttcgcgcgcggt
gccgagctgttcgaccgcgagaccgcgctgccggtgcggcacgactcgcccgagaccatc
gcggccgagctgcggcggcgcagtgaagcgcaaggcgatccgcgccttgtgttgaccttc
ccggtggaattgcccgccaacaccacgcccgaggaaatcgagcaatggctctcggccagc
ggctacacccgcgtgcaggccgagcgcacggtgcagcgcgaggtgaaagacgaggcgccc
gccaagggcaaaaaggccaagcccgcgatcgaggccgtgaagctgctcgacgtggtggcc
gaccgcttccgcatcgccggtgccgagccggcgcgcgtgatggaggccatcgagaccggc
ctcaagcgtggcggtggccggctcacggtgtacgccttgaaggaggagggcgagccggag
atctggaagttttccaccggcctgcactgccccgagagcgacatccgctacaccgagccc
acgccctcgatgttctcgttcaactcgccggtgggcgcctgcgacacctgccgtggcttc
ggccgcgtgatcggcgtcgactacggcctggtgatcccgaacgagaagctcacgctgcgc
aacggtgccatcaaggtgttccagacgcccgcgtggaaggagtgccaggacgacctgatg
cgccacgccgaagcggcgggcattccgcgcgacacgccctgggccaagctcacgcccgag
cagcaggcctgggtgaagaacggctcgccgcagtggaacggcaagtggaaccagcactgg
tacggcgtgggccgcttcttcgagtacctggagagcaaggcctacaagatgcacatccgc
gtgctcttgtccaagtaccgcagctacaccgaatgcccggtgtgccggggcgcgcgcctg
aagaccgacagcctgctgtggcgcgtgggcacccgcgcgcaggccgacgcggtgctggaa
cccgcgcagcgctacctgccggcgggcgtgcagtggtcgcgcgcgcaactcgaggcgctg
cccggcctgtgcctgcacgacctgatgctcatgccgctgacggacctgcggcgcttcttc
gactccatcgcgcccgcgcaggcgggcagctcgggcgagcagcaggcgctcaagctgctg
ctcgaagaaatcaacacccgcatccgctacctctgcgaggtcggcatcggctacctcacg
ctcgaccgacagagccgcacgctcagcggcggtgaggtgcagcgcatcaacctcaccacg
gcgctgggcacctcgctggtgaacacgctgttcgtgctcgacgagcccagcatcggcctg
cacccgcgcgacatggcgcgcatcgtggacgcgatgaagcgcttgcgcgacgccggcaac
accctggtggtggtggagcacgacccggccgtgatgctcgccgccgaccggctcatcgac
atgggcccgggccctggcgagcgcggcgggcagatcgtgttcgacggcacgcccgagcag
atccgcgcggccgacacgctcaccggcgcctacctcggcgcgcgcaagaccatcggcatg
ggcttcaagcgggcggtgacggacagcacgccgcgcctgatcctcgaaggcgcgagcgag
cacaacctcaagcacgtgtcggtggagttcccgctgcagcgcctggtggtggtcaccggc
gtgtcgggctcgggcaagtccacgctcatccaggacgtgctggcgccggcgctcatgcgc
cacttcggccagagcaccgaatcgcccggcgcgcacgaccggctgctgggcgccgaacaa
ctcgccgacgtggtcttcgtcgaccagtcgcccatcggcaagacggcgcgctccaacccc
gtcagctacgtgggcgcctgggacgccatccgcgcgctcttcgccgacgcgccgctgtcg
cgccagcgcagctacacgccggccaaattcagcttcaacagcggcgacgggcgttgcccg
acctgcggtggctcgggcttcgagcacgtggagatgcagttcctctccgacgtctacctg
cgctgcccggattgcgacggcaagcgctaccggcccgagatcctggaggtgaagatcgac
cgcggccagcggatgctcaacgtggccgacgtgctcgaactcacggtcaacgaagcggcg
cagctcttcgcgcacgatcgcgaagtcatccgcgcgctgcaacccatcgtggacgtgggc
ctggagtatgtgaagctcggtcagcccgtgcctaccctctcgggtggtgaggcgcagcgc
ctcaagctcgcgggcttcctggccgaggccgccaagtccgccagctcgagccgccagccc
ctgtcgcgcaagggcacgctgttcctgttcgacgagcccaccaccggcctgcacttcgac
gacatcgccaagctcatgcgctcgctgcgcaagctgctggacgcaggccattcgctggtg
gtgatcgagcacaacctcgacgtgatccgcgcggccgactggctcatcgacctgggccca
gaaggcggcgcgggcggcggcacggtggtggccgaaggcccgccagagcaggtgcgtgaa
caccccaccagccacaccgcgctggccctgcgcgactacgcggtggccatggaccgggtg
tacgcggtgaacgagcggccggcggcgccgtaccgtgcgcgcgccgcgcggcgcggcccg
cacgacgaggccatccgcatcgtcaacgccaaggaacacaacctcaagcaactcagcgtg
aacatcccgcgcggcaagttcaacgtcatctcgggcgtcagtggctcgggcaagagcacg
ctggccttcgacatcctgttcaacgaaggtcagcgccgctacctggagagcctcaacgcc
tacgcgcgcagcatcgtgcagccggccggccggcccgaggtggacgcggtctacggcatc
ccgcccacggtggcgatcgagcagcgcctctcgcgcggcggacgcaagagcacggtgggc
accaccaccgaggtctggcacttccttcgtttgctctacgtgaagctgggcacgcagcac
tgcgtgcacgacggcgcggccgtgaagccgcagagcgccgacagcatcgcggccgccatc
ctgcgcaagcacgcgggccggcacgtgggcctcctggcaccgctggtggtcaaccgcaag
ggcgtatacaccgaactggccgactgggcgcgcccgcgcggccacagccacctgcgcgtg
gacggcgagttcctgcccaccacgggctttccgcgcatcgaccgcttcaaggaacacacc
atcgaactgccggtggccgacttcgtggtcgacccggccaacgagggccagctgcgcagc
gaactggcgaaggcactggagcacggcaagggcatcctgcacctgctgcacccgctcgac
gggctgaaggacgccatcgccgacggccgctcgacgcgcgagatcggcgcggtggaggtg
ttcagcaccgcgcgcgcctgcccggtgtgcagcaccagctaccccgagctggacccgcgc
ctgttctcctacaacagcaagcacggctggtgccccgactgcgtgggcaccggcacccag
ctctcgcgcgagcagcgcaaggcgctggacgattcggtgcgcgacgacgaccagaaaggc
cgcgagcagagcttcgccgagcccgaggtggagggcgtgggcgacgagatctgcccgacc
tgcgaaggcacgcgactgaacgcgcaggcgcgcgccgtgcgcttcggtggcgtggccatc
accgacatcgcgcgcctctcggtgagcgaggtgcgccaatgggttcgtggcctgatggcc
agcgaaggcctgaccggtcgcgaggccgacatcgcgcgcgacctgctgccggagatcgaa
agccgcctggccttcctggaacaggtcggcctgaactacctcacgctcgaccgcggcgcg
cccacactcagtggcggcgaggcgcagcgcatccgcctcgcggcgcaactgggcagccac
ctgcagggcgtgtgctacgtgcttgacgagcccaccatcggcctgcacccgcgcgacaac
cagatcctgctcgatgccctgcaccagctcggcgcgcagggcaacaccctggtggtggtg
gagcacgacgaggacaccatccgccgcgccgatcacatcatcgacatcggccccagtgcg
ggcaagcgcggcggacgcgtggtggcgcagggctcggtggctgacctgtcggccaacgcc
gagtcggtgacgggccgttacctgctgcacgccatgaagcacccgctgcaggcgcgccgc
accgtgcgggccgacgaacccgaactcgagttgcgcggagcggccctgcacaacctgcag
cagctggacgtgaaggtgccgctcaagcgcctggtggtcgtcaccggcgtgagcggctcg
ggcaagagcacgctggcgcgcgacgtgctgctcaccaacgtggccgaggccgtgtccatg
cgcagcaccgctgccggcaagaaggcctgggacaagggcgagcggcccgcctggtccggc
tgcgagcgcctgattggcagcgaggtggtggaccgcgtgctcgaggtcgaccagacgccc
atcggcaaaacgccgcgctcctgcccggccacctacatcggcttctgggacacggtgcgc
aagctctttgccgacacgctggaggccaaggcgcgcggctacggcccgggccgcttcagc
ttcaacaccggcgaaggccgctgcccgagctgcgaaggccagggcgtgcgcaccatcgag
atgagcttcctgcccgacgtgaaggtgccctgcgaaacctgccacggcgcgcgcttcaac
cccgagacgctggccgtgacctggaaaggcaagagcatcggcgacgtgctgcagatggag
gtggacgaagcggtggacttcttcgcctccatgcccgccatcagccacccgctgcaactg
ctcaaggacgtgggcctgggctacctcacgctgggccagccctcgcccaccttgagcggc
ggcgaggcgcagcgcatcaagctcgtcaccgagctcagcaaggtgcgcgacgaggtgggc
cggcgcggccagaaggcgccgcacacgctctacgtgctggacgaacccacggtgggcctg
cacatggccgatgtggagaagctcatccgcgtgctgcaccgcctggtggacggcggccac
agcgtggtggtgatcgagcacgacctggacgtgatggccgaggccgactggatcatcgac
ctgggacccgagggcggatcgggcggcgggcgcgtggtcgccgcggcggcgcccgaggcg
gtggtggccgcgggcacgcacacggggcgcgtgctggcgccggtgctggcgcggcggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (24)   
   Pfam (24)   
All databases (31)   

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