KEGG   Kocuria sp. KD4: HBK84_03055
Entry
HBK84_03055       CDS       T06521                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
kod  Kocuria sp. KD4
Pathway
kod03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kod00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HBK84_03055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kod03019]
    HBK84_03055
   03009 Ribosome biogenesis [BR:kod03009]
    HBK84_03055
Enzymes [BR:kod01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     HBK84_03055
Messenger RNA biogenesis [BR:kod03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     HBK84_03055
Ribosome biogenesis [BR:kod03009]
 Prokaryotic type
  rRNA helicases
   HBK84_03055
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_30 CMS1 GET4 UvrA_inter
Other DBs
NCBI-ProteinID: QIR70803
UniProt: A0A6G9V5L7
Position
675803..678076
AA seq 757 aa
MPPKRGSSVSTDSLSQNENPHNETPEHDAAPAVTDAPDNHDVVVDAQRTDSGEATEPADQ
PSEAEQTARDDDAAEPAEQPVENDSAEKRAENGSTEKSADAEKSEPNPPTFAELGVDARV
LAALDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSKLAELSDLHGP
QRSTRVLVLAPTRELALQVAEAFGSYATHLDDFTVLPVYGGSSYGPQLAGLKRGAQVVVG
TPGRVIDHLAKGSLNLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPKEKQVALFSATMP
KAIRRIAQQYLHDPQEITVKAKTTTGSNTRQRYMQVMGPHKLDAMTRVLEVEDYDGVIVF
VRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLRDGKIDILVATDVAARGLDV
ERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIEKATRQPVEQM
RVPSTDEVNQTRKENFAQQIEETIDSEDLSLFRELVKQYESEHDVDAVEVAAALAVIAQN
GRPFLLEDLPELPQRKRDRERRDGDGPRNRRSPGDEAGMKTYKLAVGHRDRVVPGAVVGA
LTHEGGLNGSQIGAIDIRPTFTLVGLPENLPAGTLDKLANTQINGSPIRIQEDRGPGGAR
GGKPFRGGDRDRGPRNDRGGYREDRGPRNDRGGYRGDRGDRGGYREDRGGYQDRGGYRED
RGGYRDDRGGGRSRGGSYQQDRPRRKNRPDNGGYSGR
NT seq 2274 nt   +upstreamnt  +downstreamnt
attccaccgaagcgaggttcttccgtgtccactgactccctgtcccagaacgaaaatccc
cacaacgagacccccgagcacgacgccgctcccgccgtgaccgacgcccccgacaaccac
gacgtcgtcgtcgacgcgcagcgcaccgacagcggcgaggcaaccgagcccgccgaccag
ccttccgaagccgagcagaccgcccgggacgacgacgccgccgagccggccgagcagccc
gtcgagaacgactctgccgagaagcgcgccgagaacggctccacggagaagtccgccgac
gccgagaagtccgaaccgaacccgcccacgttcgccgaactgggcgtggacgcgcgcgtg
ctggcggcactggacgaggtgggctacgagtacccctcgcccatccaggccgcgacgatt
cccgcgctgctgagcggccgcgacgtcgtcgggctcgcgcagaccggtacgggcaagacc
gccgcgttcgccgtgcccgcactgtccaagctcgcggagctgtccgacctgcacggcccg
cagcgcagcacgcgcgtgctggtgctcgcgccgacccgcgaactcgcgctgcaggtcgcc
gaggccttcggctcctacgcgacccacctggacgacttcaccgtgctgcccgtgtacggc
ggctcctcgtacggtccgcagctcgcgggcctcaagcgcggcgcgcaggtggtcgtggga
accccggggcgcgtgatcgaccacctggccaagggctcgctcaacctggacgacatcgcg
tacgtggtgttggacgaggcggacgagatgctgcgcatgggcttctccgaggacgtcgag
aagatcctggcgcagacccccaaggagaagcaggtggctctgttctccgccactatgccc
aaggccatccgccggatcgcgcagcagtacctgcacgacccccaggagatcacggtcaag
gccaagaccactacgggcagcaacacccggcagcggtacatgcaggtcatgggcccgcac
aagctggacgccatgacccgcgtgctcgaggtcgaggactacgacggcgtgatcgtcttc
gtgcgtaccaaggccgccacggaggagatcgcggacaagctcaaggcccgcggctacacc
gccgccgcgatcaacggtgacatcccacagaacctgcgcgagcgcaccgtggactcgctg
cgcgacggcaagatcgacatcctcgtggccacggacgttgcagcccgcggtttggacgtc
gagcggatctccctggtggtcaactacgacatcccccacgacaccgagtcctacgtgcac
cgcatcggccgcaccggccgcgcggggcgtaagggtgaggccatcctgttcatgaccccg
cgcgagaagtacctgctgcgcgcgatcgagaaggccacccgccagcccgtcgaacagatg
cgcgtgccctccacggacgaggtcaaccagacccgcaaggagaacttcgcgcagcagatc
gaggagaccatcgactccgaggacctctcgctgttccgtgagctcgtgaagcaatacgag
tccgagcacgacgtcgacgccgtcgaggtcgccgctgcgctcgccgtgatcgcccagaac
ggccgcccgttcctcctggaggacctgcccgagctgccgcagcgcaagcgggaccgcgag
cgccgtgacggcgacggcccccgcaatcgccgttccccgggggacgaggccgggatgaag
acctacaagctggccgtggggcaccgcgatcgggtagtccccggcgccgtggtgggtgcc
ctcacgcacgagggcggtctcaacggttcgcagatcggtgcgatcgacatccgccccacg
ttcacgctcgtgggtctgcccgagaacctccccgcgggaaccctcgacaagctggccaac
acccagatcaacggttcgcccatccggatccaggaggatcgcggacccggtggcgcgcgc
gggggcaagcccttccgcggcggtgaccgtgaccgtggaccccgcaacgaccggggcggg
taccgcgaggatcggggcccgcgcaacgaccgcgggggctaccgcggcgaccgtggtgac
cgcgggggataccgtgaggaccggggcggctaccaggatcgcggtgggtaccgcgaggat
cgtggcggttaccgcgatgatcgcggcggcggccgttcccgtggcgggtcctaccagcag
gaccggccacgtcggaagaaccgcccggacaacggcggctactcgggtcgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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