KEGG   Larimichthys crocea (large yellow croaker): 104920949
Entry
104920949         CDS       T04659                                 
Symbol
pif1
Name
(RefSeq) ATP-dependent DNA helicase PIF1
  KO
K15255  ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
Organism
lco  Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:lco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lco03032]
    104920949 (pif1)
   03029 Mitochondrial biogenesis [BR:lco03029]
    104920949 (pif1)
Enzymes [BR:lco01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     104920949 (pif1)
DNA replication proteins [BR:lco03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    104920949 (pif1)
Mitochondrial biogenesis [BR:lco03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial DNA replication factors
   Mitochondrial DNA maintenance factors
    104920949 (pif1)
SSDB
Motif
Pfam: PIF1 AAA_30 Pif1_2B_dom AAA_19 AAA_22 Herpes_Helicase UvrD_C_2 Mg_chelatase DEAD AAA_7 RsgA_GTPase AAA_16 AAA_5 ABC_tran PhoH
Other DBs
NCBI-GeneID: 104920949
NCBI-ProteinID: XP_019114589
Position
XII:17717721..17725182
AA seq 631 aa
MFAGEDAAQLQCCVAVEQLNASGQATRRQVIRKASVILGRNEFQEIILRVHDGKVPQSYR
MKEFKLFTKFAREGKCTVKLLPENIQVLISNCPPDRLNLFLKTLSIKHLAWQSSKPLSDR
EKLKAGLPRSFEAISPLQQKDIQKVNEMRSKVAPKGLSDRTNKMTVAGTGQQVKRSRSDT
NFSPVKANPSKKPILSLPTRKLNKEQAAVLSAVLSGKNVFFTGSAGTGKSFLLKRIMGSL
PPKSTFATASTGVAACHIGGTTLHNFAGIGSGSAPLEQCIELAQRPGVLQHWTSCRHLII
DEVSMVEAQFFDKLESLARSVRRSTEPFGGIQLIVCGDFLQLPPVSKGKEKASFCFQARS
WRKVIQLNMELTEVRRQTDQSFISLLQAVRVGRVTEEVTAKLMESAYHQIERDGILATRL
CTHKDDVELTNENKLQQLPGSVRVFEAVDSDPALVKNIDAHSPVSRLIQLKVGAQVMLTK
NLDVARGLVNGARGVVVAFEPGKHGLPRVRFLCGVTEVLKPERWVFKSGGGIHLSRQQLP
LKLAWAISIHKSQGMTLDCVEISLARVFESGQAYVALSRARSLEGLRVMDFDPRVVRADP
DVLVFYKRLRKERLLMQASMDDFVGNKENSW
NT seq 1896 nt   +upstreamnt  +downstreamnt
atgtttgccggggaggacgctgctcagctgcagtgctgtgtggcggtggagcagctgaac
gcctccggtcaggccacccggaggcaggtcatccgtaaagcctccgttatcctgggcagg
aacgagttccaggaaatcatcctccgagtccacgacggaaaagtcccgcaaagttaccga
atgaaagagttcaaactctttaccaagttcgccagagaggggaagtgcaccgtcaaactg
ctccctgaaaacatccaggtgctcatctccaactgtccccccgaccggctgaacctcttc
ctcaaaacactgagcatcaaacacctggcctggcagagcagcaagcctctgagcgaccga
gagaagctcaaggccggtctgccccgcagcttcgaggccatcagccccctgcagcagaaa
gatatccagaaggtgaacgagatgaggagtaaagtggctcccaaaggactgagtgaccgc
accaataagatgactgtggcaggaacaggacagcaggtcaaaaggtcaaggagcgacacc
aacttcagcccagtgaaggccaacccaagtaagaagcccatcctgtctctgccaacacgg
aagctgaataaagagcaggcagctgtgctcagtgctgtgctgagcggcaagaacgtcttc
tttactggaagtgcaggtaccggaaagtccttcttgctgaagagaatcatggggtctctt
cccccaaagagcacctttgccacagccagcacaggagtggctgcatgtcacatcggagga
acaacattacacaactttgccggaattggctccggctctgctccactggaacagtgtatt
gagctggctcagaggcccggagtgctgcagcactggactagctgtcgacacctcatcatc
gacgaggtctccatggtggaggcccagttctttgacaagctcgagtcgctggccaggtcg
gtgaggaggtccactgagccgttcggaggcatccagctgatcgtgtgtggcgacttcctc
cagctgcctcctgtctctaagggaaaggaaaaggccagcttctgcttccaggccaggagt
tggcgtaaagtcatccagctcaacatggagctcacagaagtgcggaggcaaactgaccag
tccttcatctccctcctacaggcagtgagggtgggcagggtgacggaggaagtcaccgct
aagctgatggaaagtgcctaccaccagatcgagagggatggcatactagcaaccaggctg
tgcacacacaaggacgacgtggagctcacaaacgagaacaaactccagcagcttccaggg
tcagtgcgtgtctttgaggcagtggacagtgacccagccctggtgaagaacatagacgct
cacagccccgtcagcaggctgatccaactcaaagtgggagctcaggtcatgctgacaaag
aacctggatgtcgctcgaggtctggtgaatggagcacgaggggttgttgtggcttttgag
cctggaaaacacggactcccacgtgtgcgtttcctgtgcggcgttacagaggtgctgaag
cccgagcgctgggtgttcaagtcaggcggtgggatccacttgagtcgacagcaactgcca
ctcaaactggcctgggccatatctattcacaagagccagggaatgacactagactgtgtg
gagatctctctggcacgtgtgtttgagagcggccaggcatacgtggctttgtcccgggct
cggagcctggagggtctgagggtcatggactttgacccgcgtgtggtcagggcagatcca
gatgttctcgtcttctacaagagactgaggaaagagaggcttctcatgcaggcctccatg
gatgattttgttggcaacaaagaaaactcttggtga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (15)   
   Pfam (15)   
All databases (36)   

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