KEGG T04712: BI355

Companilactobacillus crustorum: BI355_0375

Entry

BI355_0375        CDS       T04712

Name

(GenBank) ATP-dependent RNA helicase CshA

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

lct Companilactobacillus crustorum

Pathway

lct03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:lct00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BI355_0375
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lct03019]
    BI355_0375
   03009 Ribosome biogenesis [BR:lct03009]
    BI355_0375
Enzymes [BR:lct01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BI355_0375
Messenger RNA biogenesis [BR:lct03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BI355_0375
Ribosome biogenesis [BR:lct03009]
Prokaryotic type
  rRNA helicases
   BI355_0375

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII AAA_22 Helicase_RecD CMS1 CobA_CobO_BtuR

Other DBs

NCBI-ProteinID:

APU70731

Position

411439..412983

AA seq 514 aa
MKFKELDLDPRLLSAVDKAGFEETTPIQAQTIPLVMSGDDVIGQAQTGTGKTAAFGLPLL
NAVDTQSSDIQALIISPTRELAIQTQEELYRLGEEKKVKVQSVYGGSDIRRQIRALKSHP
QIIVGTPGRMLDHINRHTLKLHNVKTVVLDEADEMLDMGFVEDIESILSNVPNKHQTLLF
SATMPKPIMKIADKFMTDPKIVKIKSKELTADKIEQYFVKAREFEKFDLMTRLFDVQAPE
LALIFGRTKRRVDELTRGLQARGYNAEGIHGDLSQDKRTSVLRKFKAGKLDFLVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGVSVTFVTPNEMGYLRTIENLTKK
RMEPLAPPTDKEVLKGQLESVKQEIKDTLEHDKHLDRFDSAVEELLSEYSAEDIARIFLS
DAIKDAESVPVKIAPERPLPSRKVSHSRSGHGRRGGRGNGGGHRGGGDHRRRNSDRRDGG
RNHDDRKGGKRREHDNKRNGRSKKSFKIRTNLEK

NT seq 1545 nt +upstreamnt +downstreamnt
gtgaaatttaaagaattagatttagatcccagattattgagtgccgtagacaaagccggt
tttgaagaaactacacctattcaagctcaaactattccgctagttatgagtggcgatgac
gtcatcggacaagctcaaactggtacaggtaagacggcagcctttggcttaccattgcta
aatgccgttgatactcaatcaagtgatattcaagcattgattatctcaccaactagagaa
ttagctatccaaacacaagaagagttatatcgtttgggtgaggaaaagaaagttaaggtt
caaagtgtttatggtggatctgatattagacgtcagattcgtgcattgaagagccatccg
caaattattgtcggaacacctggtagaatgcttgatcatatcaaccgtcacacattgaaa
ttacataatgtgaagactgttgttcttgatgaagctgatgaaatgcttgatatgggattc
gttgaagatattgaaagtattctttctaacgttcctaacaagcatcaaacattgttgttc
tcagcaacaatgcctaagccaatcatgaagattgctgataaatttatgacagaccctaag
attgttaagatcaagtcaaaagaattaactgctgataagatcgaacaatactttgttaaa
gctagagaatttgaaaagtttgacttgatgacacgtttattcgatgttcaagctccagag
ttggctttgatttttggtcgtacaaagcgtcgtgttgatgaattaacacgtggtttacaa
gctcgtggctacaatgctgaaggtattcatggtgacttgtcacaagataaacgtactagt
gttttacgcaagtttaaagctggtaagttagacttccttgttgctactgatgtggctgcg
cgtggtttggatatttctggtgtatcacatgtttataactatgatattcctcaagatcct
gatagttatgttcaccgtattggccgtactggtcgtgccggacattctggtgtgtcagta
actttcgttacaccaaacgaaatgggttacttacgtacaattgagaatcttacaaagaaa
cgtatggaaccattagctccaccaactgataaagaagttcttaagggacaacttgaatct
gttaaacaagaaatcaaagatactttggaacatgataagcatcttgatcgtttcgattca
gctgttgaagaattactttcagaatattctgctgaagacattgctcgtattttcctaagc
gatgctatcaaagatgctgaaagtgttcctgttaagattgctcctgaaagaccacttcct
tcaagaaaagttagtcatagccgttcaggccatggccgtcgtggtggaagaggcaacggt
ggcggacatcgtggcggtggtgatcaccgtagacgtaatagtgatcgtcgcgatggtggt
cgtaaccatgatgatcgtaaaggtggcaaacgccgcgaacatgacaacaaacgtaatggt
cgtagcaaaaagtcatttaagattagaactaatctagaaaaataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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