KEGG T05304: C1X05

Laceyella sacchari: C1X05_15530

Entry

C1X05_15530       CDS       T05304

Name

(GenBank) excinuclease ABC subunit B

K03702

excinuclease ABC subunit B

Organism

lfb Laceyella sacchari

Pathway

lfb03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:lfb00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    C1X05_15530
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lfb03400]
    C1X05_15530
DNA repair and recombination proteins [BR:lfb03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C1X05_15530
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      C1X05_15530

SSDB

Motif

Pfam:

UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_19 Phage_Mu_Gp48 AAA_22 AAA_16 HEM4 UB2H AAA_5 AAA_25 AAA_7 Thg1C

Other DBs

NCBI-ProteinID:

AUS10097

Position

complement(3143683..3145662)

AA seq 659 aa
MEKRFQLVSEFQPQGDQPQAIQKLVQGIEQGERYQTLLGATGTGKTFTIAQTINRVNKPT
LVIAHNKTLAAQLCGELKEFFPHNAVEYFVSYYDYYQPEAYIPATDTYIEKDASINDEID
KLRHSATSALFERSDVIIVSSVSCIYGLGSPTEYKEMVLSLRVGMEKERNEVLRKLVDIQ
YERNDINFTRGTFRVRGDVVEIFPASRSEQAVRVEFFGDEIERIREIDVLTGEILGDREH
VAIFPASHYVTRQAQLERALTSIEAELEERLKELRDAGKLLEAQRLEQRTRYDMEMIREV
GFCSGIENYSRHLVGKQPGEAPYTLLDFFPDDYLIIVDESHVTIPQINGMYNGDQARKTM
LVDHGFRLPSAKDNRPLKFAEFEEKINQIVFVSATPGPYELEKCPTVVEQIIRPTGLLDP
VIHIHPIQGQIDHLIGEINKRIAEDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSDIK
TIERMQILRDLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNARGEVIMYADKITDSMRRAIEETERRREIQMKYNEEHGITPQTIRKKVHDVIEATK
VAEDQAEYQVDKEMKKLSKGERLKLIEQMEKEMKQAAKDLNFERAAELRDLILELKAEG

NT seq 1980 nt +upstreamnt +downstreamnt
atggagaagagatttcaactggtttcagagtttcaaccgcaaggtgaccagccacaagcg
atacaaaagctggtgcaggggattgaacagggtgagcgctatcaaacattgttgggggcc
accggaacgggaaagacattcaccatcgcacaaaccatcaaccgagtgaacaaaccgacg
ctggtgattgcgcataataaaaccttggcggcgcaattgtgtggggagttaaaggagttt
ttccctcacaacgccgtcgagtattttgtgagttattatgattattatcaaccggaggcc
tatatcccagccaccgatacgtatattgaaaaggatgcttccatcaacgatgagatcgac
aagttacgccactcggctacgagcgcgttgtttgagcgttccgatgtgatcatcgtgtcc
agtgtttcttgtatctacggtttgggttcgccgaccgaatacaaggaaatggtgttgtcg
cttcgggtggggatggaaaaagagcggaatgaagtattgcgcaagctggtcgatatccag
tacgagcggaatgacatcaatttcacgcgcggcacgttccgcgtgcgcggcgatgtagtt
gaaatcttcccagcctctcgcagtgaacaggcggtacgggtcgaattttttggtgacgag
attgaacggattcgcgaaatcgacgtgctgacgggggaaatcctcggtgatcgggagcat
gtcgccatttttccggcttcccactatgtgacgagacaagcccaattggagcgggctctc
acttcgattgaggctgaattggaagagcggcttaaagagttgcgggatgcgggcaaactg
ctggaagcccagcgccttgagcaacggacgcgttatgatatggaaatgattcgtgaagta
ggtttttgttctgggattgaaaactattcgcgacacctagtggggaaacaaccaggggaa
gccccttacaccttgttggatttttttcctgatgattacctgatcatcgtagacgaatcg
catgtgactatcccacaaatcaacggaatgtacaatggggaccaagcacgcaaaaccatg
ttggtggatcacggattccgattgccgtcggcgaaggataaccgcccgctcaagtttgcc
gagtttgaagagaaaatcaaccagatcgtgttcgtttcggcgaccccggggccgtatgaa
ttggaaaaatgccccacggtggtcgaacagatcatccgtccgaccggtttgctagacccc
gtgattcacattcatccgattcaggggcaaatcgaccacctgatcggagagatcaacaag
cgaattgccgaagacgagcgggtattggtaaccaccttgaccaagaagatggcagaggac
ttgaccgattatctcaaagaaattgggatcaaggtgcgttatttacattcagacatcaag
acgattgagcggatgcaaattctgcgcgatttgcgtttgggtgaatttgatgtgctgatc
gggatcaacctgttaagagaagggttggacttgccagaagtttcattagtcgccattttg
gacgccgacaaagaagggttcctgcgctcagaacgctccctgatccagacgattggccgg
gcggcgcgaaatgccagaggggaagtgatcatgtatgccgataagatcacagactccatg
cggcgagcaatagaggaaaccgaacgtcggcgcgagattcagatgaagtacaacgaggag
cacggcattacgccgcagacgattcggaaaaaggtgcatgatgtcattgaagcgaccaaa
gtggctgaagaccaagcagaataccaagtggacaaggaaatgaagaaattgtccaagggt
gagcgactgaagctgatcgagcagatggagaaagaaatgaagcaagctgccaaggatctc
aatttcgaacgagcggccgaattgcgcgacctcatcttggagcttaaagcggagggttaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (17)   
   Pfam (17)   
All databases (32)   

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