KEGG   Lysobacter gummosus: LG3211_0093
Entry
LG3211_0093       CDS       T04163                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
lgu  Lysobacter gummosus
Pathway
lgu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LG3211_0093 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lgu03400]
    LG3211_0093 (recD)
Enzymes [BR:lgu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LG3211_0093 (recD)
DNA repair and recombination proteins [BR:lgu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LG3211_0093 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 RecD_N AAA_11 UvrD-helicase Helicase_RecD AAA_22 SH3_13 UvrD_C DEAD T2SSE SLFN-g3_helicase Herpes_Helicase nSTAND3 AAA_28
Other DBs
NCBI-ProteinID: ALN89083
Position
92232..94067
AA seq 611 aa
MSLLDSLYREGALRTVDHALAQSLRRLDRDTPDRVLAAAALASQAIARGHAAFDPRRPQL
LTEAAIEWPDGDQWLAALADSRWIATPQADRPADPAAPLVLERGLLYLRRYREYERRLAQ
GLRRIAAFAPAPADLPALAPLFAALFPDARDDDRQARAAALALLQSLLLATGGPGTGKTT
TIARLLVLLIAQARLDGVPPPRIALAAPTGRAAERMAESLRAAAERLCTLDAVEASLCDA
LPRQASTLHRLLGSVPDSPRFRHDARNPLAFDVIVVDEASMVDLPLMCKLVEAVPDGVRL
ILLGDRDQLPSVEAGDVLAAIVDAAGDDDGLPAEWAVQLRPLLGEDTPVQHAAQPLSAYR
VHLRRGYRQAESLDLAPLAEATRAGDADTALELLRGGVLAGVHFHEDLHDPLAGGGRERL
LSAWREIGATDDPAQALALAAKLRLLTAMRDGGQGAAPLNARIEEALAGSHRPAYFHGRL
LLVTENSYRHGLFNGDIGVCLRPRGDEHAGAATVAWFAGGSDGVRGFHPSALPAHGGAFA
MTVHKAQGSEFDSVWLQLPRQDARHLSRELIYTGLTRARRELHIAASEAVLRLALSRHAA
RVSGLSWRLGA
NT seq 1836 nt   +upstreamnt  +downstreamnt
atgagcctgctcgacagcctctaccgcgaaggcgcgctgcgcacggtcgatcacgccctg
gcgcagtccttgcgccggctcgatcgcgacacgcccgatcgcgtgctcgccgcggcggcg
ctggcttcgcaggcgatcgcgcgcggccacgccgcgttcgatccgcgccgcccgcagttg
ctgaccgaagcggcgatcgaatggcccgatggcgatcaatggctggcggcgctggccgat
tcgcgctggatcgcgacgccgcaggccgaccgtccggccgatccggcggcgccgttggtg
ctcgaacgcgggctgctgtatctgcgtcgttatcgcgaatacgaacgccgcctggcgcaa
ggcctgcgccgcatcgccgcgttcgcgccggcgccggccgatctgcctgcgctggcgccg
ctgttcgcggccttgtttcccgatgcgcgcgacgacgaccgccaggcgcgcgcggcggcg
ttggcgctgctgcagtcgctgctgctcgccaccggcggccccggcaccggcaagaccacc
accatcgcgcgattgctggtgctgttgatcgcgcaagcgcgcctggacggcgtgccgccg
ccgcgcatcgccctggccgcgccgaccggccgcgccgccgagcgcatggccgaaagcctg
cgcgcggcggccgaacgcctgtgcacgctcgacgcggtcgaggcctcgctgtgcgatgcc
ttgccgcgacaggccagcaccctgcaccgcttgctcggcagcgtgccggacagcccgcgg
ttccgtcacgacgcgcgcaatccgctggccttcgatgtgatcgtggtcgatgaggcctcg
atggtcgatctgccgctgatgtgcaagctggtcgaggccgtgcccgatggcgtgcggctg
attctgctcggcgatcgcgatcagctgccgtcggtggaagccggcgatgtgctcgcggcg
atcgtcgatgcggccggcgacgacgacggcttgccggcggagtgggccgtgcaactgcgg
cccttgctcggcgaggacacgccggtccagcacgcggcgcagccgctgagcgcgtatcgc
gtgcatctgcgtcgcggctatcgtcaggccgagagcctggacctggcgccgctggccgag
gccacgcgtgccggcgacgccgacaccgcgctcgaactgctgcgcggcggcgttttggcc
ggcgtgcatttccacgaagacctgcacgatccgctggccggcggcgggcgcgagcgcctg
ttgtcggcgtggcgcgaaatcggcgcgaccgacgatccggcgcaggcgctggccctggcg
gcgaagctgcgtctgctgacagcgatgcgcgacggcggccagggcgccgcgcccttgaac
gcgcggatcgaggaagcattggccggcagccatcgcccggcgtatttccacggccgtctg
ttgctggtgaccgagaacagctatcgccacggcctgttcaacggcgacatcggcgtgtgt
ttgcggccgcgcggcgacgaacatgcgggcgcggcgacggtggcgtggttcgccggtggc
agcgacggcgtgcgcggcttccatccctcggccttgcccgcgcacggcggcgcgttcgcg
atgaccgtgcacaaggcgcagggctcggaattcgacagcgtgtggctgcaactgccgcgt
caggacgcacggcacttgtcgcgcgaactgatctacaccggcctgacccgggcgcggcgt
gagttgcatatcgccgccagcgaagcggtgctgcggctggcgttgtcgcggcacgcggcg
cgcgtgtcggggttgtcgtggcggttgggggcgtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (17)   
   Pfam (17)   
All databases (19)   

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