KEGG   Lysobacter gummosus: LG3211_0093Help
Entry
LG3211_0093       CDS       T04163                                 

Gene name
recD
Definition
(GenBank) exodeoxyribonuclease V, alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
lgu  Lysobacter gummosus
Pathway
lgu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LG3211_0093 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lgu03400]
    LG3211_0093 (recD)
Enzymes [BR:lgu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LG3211_0093 (recD)
DNA repair and recombination proteins [BR:lgu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LG3211_0093 (recD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: AAA_30 AAA_19 UvrD_C_2 Viral_helicase1 AAA_11 Helicase_RecD UvrD-helicase UvrD_C SH3_13 AAA_22 AAA_28 DUF2075 Herpes_Helicase T2SSE DEAD NTPase_1
Motif
Other DBs
NCBI-ProteinID: ALN89083
UniProt: A0A0S2FZV5
Position
92232..94067
Genome map
AA seq 611 aa AA seqDB search
MSLLDSLYREGALRTVDHALAQSLRRLDRDTPDRVLAAAALASQAIARGHAAFDPRRPQL
LTEAAIEWPDGDQWLAALADSRWIATPQADRPADPAAPLVLERGLLYLRRYREYERRLAQ
GLRRIAAFAPAPADLPALAPLFAALFPDARDDDRQARAAALALLQSLLLATGGPGTGKTT
TIARLLVLLIAQARLDGVPPPRIALAAPTGRAAERMAESLRAAAERLCTLDAVEASLCDA
LPRQASTLHRLLGSVPDSPRFRHDARNPLAFDVIVVDEASMVDLPLMCKLVEAVPDGVRL
ILLGDRDQLPSVEAGDVLAAIVDAAGDDDGLPAEWAVQLRPLLGEDTPVQHAAQPLSAYR
VHLRRGYRQAESLDLAPLAEATRAGDADTALELLRGGVLAGVHFHEDLHDPLAGGGRERL
LSAWREIGATDDPAQALALAAKLRLLTAMRDGGQGAAPLNARIEEALAGSHRPAYFHGRL
LLVTENSYRHGLFNGDIGVCLRPRGDEHAGAATVAWFAGGSDGVRGFHPSALPAHGGAFA
MTVHKAQGSEFDSVWLQLPRQDARHLSRELIYTGLTRARRELHIAASEAVLRLALSRHAA
RVSGLSWRLGA
NT seq 1836 nt NT seq  +upstreamnt  +downstreamnt
atgagcctgctcgacagcctctaccgcgaaggcgcgctgcgcacggtcgatcacgccctg
gcgcagtccttgcgccggctcgatcgcgacacgcccgatcgcgtgctcgccgcggcggcg
ctggcttcgcaggcgatcgcgcgcggccacgccgcgttcgatccgcgccgcccgcagttg
ctgaccgaagcggcgatcgaatggcccgatggcgatcaatggctggcggcgctggccgat
tcgcgctggatcgcgacgccgcaggccgaccgtccggccgatccggcggcgccgttggtg
ctcgaacgcgggctgctgtatctgcgtcgttatcgcgaatacgaacgccgcctggcgcaa
ggcctgcgccgcatcgccgcgttcgcgccggcgccggccgatctgcctgcgctggcgccg
ctgttcgcggccttgtttcccgatgcgcgcgacgacgaccgccaggcgcgcgcggcggcg
ttggcgctgctgcagtcgctgctgctcgccaccggcggccccggcaccggcaagaccacc
accatcgcgcgattgctggtgctgttgatcgcgcaagcgcgcctggacggcgtgccgccg
ccgcgcatcgccctggccgcgccgaccggccgcgccgccgagcgcatggccgaaagcctg
cgcgcggcggccgaacgcctgtgcacgctcgacgcggtcgaggcctcgctgtgcgatgcc
ttgccgcgacaggccagcaccctgcaccgcttgctcggcagcgtgccggacagcccgcgg
ttccgtcacgacgcgcgcaatccgctggccttcgatgtgatcgtggtcgatgaggcctcg
atggtcgatctgccgctgatgtgcaagctggtcgaggccgtgcccgatggcgtgcggctg
attctgctcggcgatcgcgatcagctgccgtcggtggaagccggcgatgtgctcgcggcg
atcgtcgatgcggccggcgacgacgacggcttgccggcggagtgggccgtgcaactgcgg
cccttgctcggcgaggacacgccggtccagcacgcggcgcagccgctgagcgcgtatcgc
gtgcatctgcgtcgcggctatcgtcaggccgagagcctggacctggcgccgctggccgag
gccacgcgtgccggcgacgccgacaccgcgctcgaactgctgcgcggcggcgttttggcc
ggcgtgcatttccacgaagacctgcacgatccgctggccggcggcgggcgcgagcgcctg
ttgtcggcgtggcgcgaaatcggcgcgaccgacgatccggcgcaggcgctggccctggcg
gcgaagctgcgtctgctgacagcgatgcgcgacggcggccagggcgccgcgcccttgaac
gcgcggatcgaggaagcattggccggcagccatcgcccggcgtatttccacggccgtctg
ttgctggtgaccgagaacagctatcgccacggcctgttcaacggcgacatcggcgtgtgt
ttgcggccgcgcggcgacgaacatgcgggcgcggcgacggtggcgtggttcgccggtggc
agcgacggcgtgcgcggcttccatccctcggccttgcccgcgcacggcggcgcgttcgcg
atgaccgtgcacaaggcgcagggctcggaattcgacagcgtgtggctgcaactgccgcgt
caggacgcacggcacttgtcgcgcgaactgatctacaccggcctgacccgggcgcggcgt
gagttgcatatcgccgccagcgaagcggtgctgcggctggcgttgtcgcggcacgcggcg
cgcgtgtcggggttgtcgtggcggttgggggcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (26)   

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