KEGG   Lysinibacillus varians: T479_21460
Entry
T479_21460        CDS       T03062                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
lgy  Lysinibacillus varians
Pathway
lgy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lgy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    T479_21460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgy03019]
    T479_21460
   03009 Ribosome biogenesis [BR:lgy03009]
    T479_21460
Enzymes [BR:lgy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     T479_21460
Messenger RNA biogenesis [BR:lgy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     T479_21460
Ribosome biogenesis [BR:lgy03009]
 Prokaryotic type
  rRNA helicases
   T479_21460
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Helicase_RecD ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AHN23504
UniProt: A0A806LU36
Position
complement(4228938..4230482)
AA seq 514 aa
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKVGYDKRVKLLSVYGGQEIGRQIRALKNK
PQIIVGTPGRILDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAERQTLL
FSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKAAEREKFDVLSRLLNVHQP
ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLRPPTNDEALVGQQRLAIETLEGLIANNNLGDYRTLATEVLENHDAIDVVAAALR
SLTKEPDDTPVTITEERPLPMRRERSGGGGGGRGGDRNSRNRSGGGRSFGGNRREGSGGD
RRNSGGRREGGRREGGARREGGQGRSRAPRRHED
NT seq 1545 nt   +upstreamnt  +downstreamnt
ttgacaaatttttcagaattaaatattagtgaatctacactacgttcagtaaaacgtatg
ggattcgaagaagcaacaccaatccaagagggtactattcgttttgccattgaaggtcgc
gatgtattaggtcaagcgcaaactggtacaggtaaaactgccgcttttggtattccactt
atcgagaaaatcgatcctaaaaaccctaatatccaagcattagtaattgctccaactcgt
gaattagcgattcaagtttcagaagaactatataaagtcggttacgacaagcgtgtgaaa
ttattatcagtttacggtggtcaagaaatcggacgtcaaattcgtgcactgaaaaataaa
ccacaaattattgttggtacaccaggtcgtattttagaccatattaatcgtcgtacttta
aaactagaagatgttcaaacacttgtactggacgaagcagatgaaatgttaaacatgggc
ttcatcgatgatataaattcaattttagaaaacgtacctgctgagcgccaaacattatta
ttctcagcaacaatgccaccagcaatccgtaaaatcgctgagacatttatgcgtgaccct
gaaattgtaaaaattaaagcaaaagaattaacagtggataacattgatcaatactttgtg
aaagctgctgagcgcgaaaaattcgatgttttatctcgtctattaaacgttcaccaacca
gaattagcgattatctttggacgtacaaaacgccgtgttgatgagctagcacaagcttta
tcaatccgaggatatcttgctgaaggaattcatggtgatttaagccaagcaaaacgtatt
tcagttttacgtcaatttaaagaaaataaaattgatatccttgttgcaacagatgtagca
gctcgtggtctagatatttcaggcgttacacacgtgtataactttgatattcctcaagat
cctgagtcttacgttcaccgtattggtcgtactggccgtgccggaaaatcaggtcttgca
gtaacatttgtaacacctcgtgaaatgggctatttacgtattgttgaagaaacaacgaaa
aaacgtatgacaccacttcgtccgccaacaaatgacgaagctttagtaggtcaacaacgt
ttagctattgagacacttgaaggtcttattgccaataataacttaggtgattatcgtaca
ttagctacagaagtacttgaaaaccatgatgctatcgatgtagtagcagctgcattacgc
tcattaacaaaagagccggatgatacgcctgttacaattacggaagagcgtccattacca
atgcgccgtgagcgttctggtggtggcggtggtggccgcggaggcgatcgtaatagccgt
aacagaagcggtggtggtcgtagctttggcggtaaccgtcgtgaaggtagtggtggcgat
cgtcgcaacagtggaggccgtcgtgaaggtggtcgccgtgagggcggagctcgtcgtgaa
ggtggacaaggtcgttcacgtgcaccacgtcgccatgaagactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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