KEGG   Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300: MMASJCM_1422
Entry
MMASJCM_1422      CDS       T03694                                 
Name
(GenBank) cold-shock DEAD-box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
mabl  Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
Pathway
mabl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mabl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MMASJCM_1422
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mabl03019]
    MMASJCM_1422
   03009 Ribosome biogenesis [BR:mabl03009]
    MMASJCM_1422
Enzymes [BR:mabl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     MMASJCM_1422
Messenger RNA biogenesis [BR:mabl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     MMASJCM_1422
Ribosome biogenesis [BR:mabl03009]
 Prokaryotic type
  rRNA helicases
   MMASJCM_1422
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII UvrA_inter CMS1 P-loop_SecA HEM4 AAA_19 adh_short
Other DBs
NCBI-ProteinID: BAP96198
Position
1411229..1413025
AA seq 598 aa
MTSTDIPTPDTGDSSAPPADDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAG
SDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQALVLAPTRELALQVAEAFGRYGAHMPK
LNVLPIYGGQSYVVQLAGLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLT
MGFAEDVERILADTPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQR
FIQVAGPRKMDALTRILEVETFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQ
RERTINALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG
TAVLFVSPRERHLLKAIEKTTGAKLAEEPLPSVEDVNAQRVTKFRDAITAALAAPEVELF
RRLVEDYERDNNVPVADIAAALAVLSRDGEQFLLQPDPPREPRHERGERPDRGPRGERSR
TPGLATYRIAVGKRHKVMPGAIVGAIANEGGLHRSDFGHITIRPDHSLVELPAKLSPKTL
KALENTRISGVLIDLRPAGGPDGARPDRKYTERRRADHKHSDHKRSEAKRPKRAPKKP
NT seq 1797 nt   +upstreamnt  +downstreamnt
atgacctctacagatatccccacgcccgacaccggcgattcgagtgcaccccccgcggat
gacaccgtcaccttcgcggacctgcacattgcccccgaggtgctgcgtgcggtgtccgac
gtggggtacgagacaccctcggccatccaggccgccaccattccgccgctgttggcgggc
tccgatgtggtgggtctggcacagaccggaacgggaaagaccgcggcgttcgcgatcccg
atcctgtcgaaaatcgatctgacctccaaggacacccaggccttggtgctggcgcccacc
cgtgagctggccttacaggtcgccgaggctttcggccggtacggcgcccacatgcccaag
ctcaacgtgctgcccatctacggcgggcagtcgtatgtggtgcagctggccggactcaag
cggggcgctcaggtggtggtcggcacgcccggacgtgttatcgaccacttggagcgcggc
accctcgatctgtcacacctggactacctggtgctcgatgaggccgacgagatgctcacc
atggggttcgccgaggatgtcgagcgcatcttggccgatacccccgagtacaagcaggtg
gctctgttctcggcgacgatgcccaccacgatccgacggctcaccaagaagtatctgcac
gatcccgtcgagatcaagatcgacgcgaagacgtcgaccgctgagaacatcacgcagcgc
ttcatccaggtggccggcccacgcaagatggacgcactcaccagaatcctcgaggtcgag
accttcgaggcgatgatcgttttcgtcaggaccaaacaggccaccgaggaggtggcagac
aagctcaaggcgcggggcttcgcggcggcggccatcaatggcgacatcaaccagtcccag
cgcgagcgcaccatcaacgcgctcaaggcgggaaccatcgacatcctggtggccacagac
gtggcggcgcgcggtctggatgttgagcgcatctcccatgtgctcaactacgacattccg
catgacaccgagtcgtacgtgcaccgcatcggccgcaccggccgtgcgggccgctcgggc
accgcggtgttgttcgtgtcgccgcgtgagcggcacctgctcaaggcgatcgaaaagacc
acgggtgccaagctcgccgaggagccgctgccctcggtcgaggatgtcaatgcccagcgg
gtcaccaagttccgcgatgccatcactgcggcgctcgcggcgccggaggtcgaactcttc
cgccgcctggtcgaggactacgagcgcgacaacaacgtcccggtggccgatatcgcggcg
gcgctggcggtgctgtcgcgcgacggcgaacagttcctgttgcaacccgatccgccgcgt
gagccccgtcatgagcgcggggagcgtcccgaccgtggacctcgtggagagcgttcgcgc
acccccggcctggcgacatatcgcatcgcggtggggaagcggcacaaggtgatgccgggc
gccatcgtgggcgcgatcgccaacgagggcggcttgcatcgcagcgacttcggccacatc
accattcggcccgatcactcactggtcgagctgcctgccaagttgtctcccaagacactg
aaggcattggagaacacccggatctcgggcgtgctcatcgatctgcgccctgccggtggt
ccggacggtgcgcgtcccgaccgcaagtacaccgaacgcagacgcgcggaccacaaacat
tcggaccacaaacgttcggaggcgaagcgtcccaagcgggccccgaagaaaccatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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