KEGG   Methylomonas sp. DH-1: AYM39_01635
Entry
AYM39_01635       CDS       T04396                                 
Name
(GenBank) exodeoxyribonuclease V subunit beta
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
mdh  Methylomonas sp. DH-1
Pathway
mdh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mdh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AYM39_01635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mdh03400]
    AYM39_01635
Enzymes [BR:mdh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     AYM39_01635
DNA repair and recombination proteins [BR:mdh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AYM39_01635
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 PDDEXK_1 ResIII DEAD Spectrin
Other DBs
NCBI-ProteinID: ANE54009
UniProt: A0A172U3T1
Position
373714..377229
AA seq 1171 aa
MAIKAFDAVGGALETGINLIEASAGTGKTYTIAMLVLRFVVERELDIKQLLVVTFTKAAS
EELKERIRARLAEARRILLNPAAGDDPAVTGWLGGLALDQNRIRQRLELALLDIDQAAIF
TIHGFCQRVLAEHALESGQLFDCELSGDVAELKLQCADDFWRRQIYQRPAWQAALLTQTY
PTPDALLQSVLRVDLQQSAYPLDTDLEAELAALPSLRAEAAAALPAAAAALNNAFADGCF
TPSFADGFSARVEALAAWLHDPDHDLPDFDCLNPATLLAGLNGNKFRAGKTKPLSAEQQK
QQYLDSLNIDCAPFQALADAVRRLPVAFRAALLASLRVELDRRLLRENVLSFDDLITRLA
AALDGDNGALLAAELRLRFRAALIDEFQDTDAKQWRIFSGVFASAEHYLYLIGDPKQAIY
KFRGADIFSYFAAQQRADRHYTLLHNWRSHPHLVQAVNRLFRREKPFLFDALDFTPVMAG
RQPGDGSIAGGAPLVLWQLDKNPGKQEHWTARKGGSGEVSARVLQAVVGEIRQLLAAGRI
AEKHGNERPVQARDIAVLVRSNAVAADYQQALLQAGIPAVLNSKQSVFASAQAFELYYVL
SAVAAAGQVNVLKQALATPWFGLDGQQLYRLSRDEAELDAWMSRFQDYLQCWRNQGLLAT
VQQLLRRERVEQHLSAQPQAERVLTNIHHLAERLQQAAIDEHLAINKTLDWLRRAIQQSA
QDSSEDRQLRLESDEDAVKIVTLHSSKGLEYPLVFCPDLWRRSDRLKTETALVQCHEHGA
MVADLGSAQFGERREQALFEELAEDLRLFYVALTRAKYRCYLNWADVRTKERANDSAMAY
LFEFADCDFAGQQRVLQQLAAAEPDLFEYRLLPAAAAGEPAELSGARRDPELPLAYRRQT
RSLHSIWQMSSYTALAALSLDQAPELPADKAEESHDRPAGDEALPRGAHTGNVIHSLLET
VAFADLAAGRDIGRASAQACLRYGLKLAQPQILSEVLYRVAATPLEDDAGFCLKHLDPAQ
CIKEMPFYLSMPSRVDTARINHALAACPAYQALDAKQISGYLTGFIDLVCCYGGRYYVMD
YKTNALADYGPPSLLQAMREHNYGLQYWLYSLVLHEYLGQRLPDYDYARHFGGVKYLFVR
GMHPDRPASGVFADRPEPSRLAELAEVFFRA
NT seq 3516 nt   +upstreamnt  +downstreamnt
atggcgattaaggccttcgacgcggtcggcggcgcgctggaaaccggcatcaacttgatc
gaagccagtgccggcaccggcaaaacttacaccatcgcgatgctggtgctgcgctttgtg
gtcgaacgcgaactcgacatcaaacaactgttggtcgtcaccttcaccaaagccgccagc
gaagaactgaaggagcgtattcgcgcccgcctggccgaagcccggcgcatcctgctgaat
ccggcggcgggcgacgatccggccgtcaccggctggctcggcggcctggccctggaccaa
aaccgtatccgccaacgcctggagctggcgctgctcgatatcgaccaggcggcaatcttc
actatccacggcttctgccagcgggtgttggcggaacacgcattggaaagcggccagttg
ttcgattgcgaattgagcggcgatgtggccgaattgaaattgcagtgcgccgacgacttt
tggcgccggcaaatctaccaacgcccggcctggcaagcggcgttgctcacccaaacctat
ccaacccccgatgcgctgctgcagagcgtgcttcgtgtcgatctgcagcaaagcgcatat
ccgctggataccgacctcgaggccgaactggcggcgttgccgagcttgcgcgcagaggct
gccgcagctttgccggcggcggccgcagccttgaataacgcgttcgccgacggctgtttt
accccaagtttcgctgacgggttttccgctcgggtcgaggccctggccgcttggctgcac
gacccggaccacgatttgccggatttcgactgcctgaatccggccacgctgttggcgggt
ttgaacggcaataaattccgcgccggcaaaaccaagccgctgtctgccgaacaacaaaag
caacaatacctggacagtctgaacatcgattgcgcgccgtttcaagcgctggccgacgcg
gtgcggcggctgccggtcgcgtttcgcgccgcactgctggccagcttgcgcgtcgagctg
gaccggcgcctgctgcgggaaaacgtgctgtccttcgacgatttgatcactcggctggcg
gctgcgctggacggcgacaacggcgccttgttggcggcggaattgcgcttgcgtttccgg
gcggcgttgatcgacgaatttcaggacaccgacgccaagcaatggcgcattttttccggc
gtgtttgccagtgcggaacattacctatacctgatcggcgatccgaagcaggcgatttac
aaattccgcggcgccgatattttttcctacttcgccgcccaacaacgcgccgaccggcat
tacacgctgctacacaactggcgttcgcatccgcatctggtgcaggccgtgaaccgcttg
ttccgccgcgaaaaaccgttcttgttcgatgccttggatttcacgccggtcatggccggc
cgccaacccggcgacggcagcattgccggcggcgcgccgctggtcttgtggcagctcgat
aagaatcccggcaagcaggaacattggaccgcgcgcaaaggcggctcgggcgaagtctcg
gcgcgggtgctgcaggccgtggtcggcgaaatccgccagttgctggcggcaggccgcatc
gccgaaaagcacggtaacgagcggccggtgcaagctcgggacatcgcggttctggtccgc
agcaacgccgttgccgccgactaccagcaggcgctgctgcaagccggcataccggcagta
ttgaacagcaagcaatcggtgttcgcctcggcgcaagccttcgagttgtactatgtgctg
agcgcagtggccgccgccggccaggttaacgtgttgaaacaggctttggcgacgccgtgg
ttcggcttggacggccaacaactgtaccggctgagccgcgacgaagcggagctggacgcg
tggatgtcgcgttttcaggactatctgcagtgctggcgcaaccagggcctgctggcgacg
gtgcaacaactgctgcggcgggaacgggtcgaacaacacctgtcggcgcaaccccaagcc
gaacgggtgttgaccaatatccaccatttggccgagcgcctgcagcaggcggccatcgac
gaacatttggcaatcaacaaaacgctggactggctgcggcgggcgatccagcaatcggcg
caagacagcagcgaagaccgccaattgcggctggaaagcgacgaggacgcggtcaagatc
gtcacgttgcacagctccaagggcctggaatatccgctggtgttctgccccgacctgtgg
cggcgcagcgaccgcttgaaaaccgaaaccgccttggtgcaatgccacgaacacggggcg
atggtcgccgacctgggctcggcacaattcggcgaacgccgcgaacaagccttgttcgaa
gaattggccgaggatttgcgcttgttttacgtggcgctaacccgagccaagtaccgctgc
tacctgaattgggccgacgtacgcaccaaggaacgggccaacgattcggcgatggcttat
ttattcgaatttgccgactgcgatttcgccggccagcagcgggtgctgcaacagctggct
gccgccgaaccggatttattcgagtatcgcctgctgccggccgcagcggccggcgagccg
gccgaattgtccggcgcgcgccgcgatccggaattgccgttggcctaccgccgccaaact
cgtagcttgcacagcatctggcagatgagcagttacaccgcgctggccgcgctgagcctg
gaccaggcgccggaactgccggccgataaagccgaagaaagccacgaccggccggccggc
gatgaggccctgccgcgcggtgcccacaccggcaacgtgatccacagcctgttggagacc
gtcgcctttgccgatttggccgcaggccgcgacatcggccgcgccagcgcccaagcctgc
ctgcgctacggtctgaagctggcgcaaccgcaaattttgagtgaagtgctgtaccgcgta
gccgccacgccgctggaagacgatgccgggttttgcctgaagcatctggacccggcgcag
tgcatcaaggaaatgccgttttacttgtccatgccaagtagggtggacaccgcccgcatc
aaccacgctttggccgcctgtccggcctaccaggcgctggatgccaagcaaatcagcggc
tatctgaccggcttcatcgatctggtctgttgttacggcggccgctactacgtcatggat
tacaaaaccaatgccttggccgattatgggccgccgagcctgctgcaggccatgcgcgaa
cacaattacggcctgcaatattggctgtacagcctggtgttgcacgaatacctgggccaa
cgcctgccggattacgattacgctcgccatttcggcggcgtcaaatacctgttcgtgcgc
ggcatgcatcccgaccgcccggccagcggcgtattcgccgaccgcccggaaccaagccgg
ctcgccgagttggccgaggtgttttttcgagcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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